Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_N12
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc...    27   3.0  
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    27   3.0  
SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|ch...    25   9.1  

>SPBC16A3.08c |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
 Frame = +3

Query: 312 LSEASQAADESERIRKALENRTNME----DDRVAILEAQLSQAKLIAEESDXK 458
           LSE   AA    R  + LEN T +E    ++  A L+   SQ K  A+ES  K
Sbjct: 181 LSERKSAAKPVGRTVEKLENATKVEKSAPEELFASLKKSASQKKSAAKESKPK 233


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 993

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -1

Query: 188 ATVCGTPRTRPYIFPFPLSFDAFSSSKRLKSFLAACLS 75
           A+V GTP  RP  F FP      S  K+     A  +S
Sbjct: 771 ASVDGTPMVRPLFFEFPKQISLASVDKQFMIGTALLIS 808


>SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 411

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 381 MEDDRVAILEAQLSQAKLIAEESDXKYXEVARKL 482
           ++ DRV+ ++  LS   L+AEE   +  E  RKL
Sbjct: 114 LQKDRVSNVDDHLSSNPLMAEEYAPEIFEYIRKL 147


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,886,289
Number of Sequences: 5004
Number of extensions: 33039
Number of successful extensions: 97
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)