Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_N11
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po...    55   8e-09
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc...    33   0.036
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces...    30   0.34 
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc...    28   1.4  
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb...    27   2.4  
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    27   3.1  
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    26   4.1  
SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces p...    26   4.1  
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   5.5  
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    25   7.2  

>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 55.2 bits (127), Expect = 8e-09
 Identities = 27/58 (46%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
 Frame = +3

Query: 474 YRVLVTGLPPSGSWQDLKDHMREAGDVCFADTFKD--GSGVVEFLRHEDMKYAVKKLD 641
           +R++V  L    SWQDLKD MR+AG+  F D  ++  G+GVVEF   EDM+ A+  L+
Sbjct: 98  FRLIVENLSEDVSWQDLKDVMRKAGEPTFTDAHRENPGAGVVEFSTEEDMRNALTSLN 155



 Score = 27.5 bits (58), Expect = 1.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 147 NECRIYVGNLPPDIRTKDIQDLF 215
           +E R++VG +PP    +D+ D F
Sbjct: 2   SETRLFVGRIPPQATREDMMDFF 24


>SPAC328.05 |||RNA-binding protein involved in export of
           mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 33.1 bits (72), Expect = 0.036
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
 Frame = +3

Query: 489 TGLPPSGSWQDLKDHMREAGDVCFADTFKD------GSGVVEFLRHEDMKYAVKKLDDSX 650
           T LP +  WQDLKD  R+AG V  AD   +      G G+V     ++  +A++ L ++ 
Sbjct: 188 TLLPYNVRWQDLKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQMLHNTD 247

Query: 651 F 653
           F
Sbjct: 248 F 248



 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +3

Query: 114 PIMSGGSSSNRNECRIYVGNLPPDIRTKDIQDLFYNV 224
           P +  G    + E R+YVGNL   +R  ++++    V
Sbjct: 53  PHLGNGQKYTQQERRVYVGNLSYQVRWFELKEFMGQV 89


>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 609

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 135 SSNRNECRIYVGNLPPDIRTKDIQDLF 215
           S+ + E  IYVGNLP   ++ D+ +LF
Sbjct: 14  STKKCEISIYVGNLPSTCQSSDLHELF 40


>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +3

Query: 471 EYRVLVTGLPPSGSWQDLKDHMREAGDVCFAD-TFKDGSGVVEFLRHEDMKYAVKK 635
           E  V V  +PP  S   LK  M   G V   +   + G+  V+F+ HE ++ A+ K
Sbjct: 314 ETSVFVKNIPPETSDVSLKSAMSIFGPVKAIEFARRKGTAYVDFVNHECVQLALNK 369


>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 640 SNFLTAYFISSCLKNSTTPDPSLKVSAKHTSPA 542
           ++FL  YF+S C         S    AKHT P+
Sbjct: 62  ASFLGLYFVSQCAARLPRGKASFAAVAKHTFPS 94


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +3

Query: 135 SSNRNECRIYVGNLPPDIRTKDIQDLF--YNVRKSNVR*PKEQKRSA 269
           SS     +I + NLP +   KD+Q L   Y   +S VR PK+  RSA
Sbjct: 715 SSKPKGTKILIKNLPFEATKKDVQSLLGAYGQLRS-VRVPKKFDRSA 760


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 159 IYVGNLPPDIRTKDIQDLF 215
           IYVGNLPP    ++++ LF
Sbjct: 428 IYVGNLPPSTSEEELKVLF 446


>SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 506

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/49 (24%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = -1

Query: 288 KFHEREWRTFSVL*VNERYFSERCKTSLEYPLSLCPVVSFQ---HIYDT 151
           +++++ WRT   +  ++  F+++ K  LE+    C  V+ +    IY+T
Sbjct: 279 EWYQKGWRTIEQVRKHKDSFTKQIKVGLEFYEDFCKTVTIEEATEIYET 327


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +3

Query: 153 CRIYVGNLPPDIRTKDIQDLF 215
           C +YVGN+P ++  + + D+F
Sbjct: 5   CVVYVGNIPYEMAEEQVIDIF 25


>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
           Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +3

Query: 192 TKDIQDLFYNVRKSNVR*PKEQKRSAIRVR 281
           T+D  DL YN        PKE+  SAI VR
Sbjct: 40  TQDSNDLQYNAHLFKSSNPKEEYDSAIDVR 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,377,660
Number of Sequences: 5004
Number of extensions: 43006
Number of successful extensions: 144
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)