Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_N11
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132904-14|CAC35847.2|  258|Caenorhabditis elegans Hypothetical...   108   3e-24
AF242767-1|AAG36874.1|  258|Caenorhabditis elegans SF2 protein.       108   3e-24
Z66521-8|CAA91394.1|  281|Caenorhabditis elegans Hypothetical pr...    40   0.001
Z66521-2|CAA91395.1|  312|Caenorhabditis elegans Hypothetical pr...    36   0.033
Z82266-4|CAB05180.1|  227|Caenorhabditis elegans Hypothetical pr...    33   0.18 
Z81038-2|CAB02757.1|  454|Caenorhabditis elegans Hypothetical pr...    33   0.23 
U23172-15|AAN63408.1|  374|Caenorhabditis elegans Hypothetical p...    31   0.94 
U23172-14|AAL02495.1|  165|Caenorhabditis elegans Hypothetical p...    31   0.94 
U23172-12|ABH03526.1|  562|Caenorhabditis elegans Hypothetical p...    31   0.94 
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch...    29   2.9  
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch...    29   2.9  
Z32680-3|CAA83598.1|  317|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    28   6.7  
U58726-3|AAB00577.1|  357|Caenorhabditis elegans Hypothetical pr...    28   6.7  
U29488-13|AAA68780.1| 1599|Caenorhabditis elegans Hypothetical p...    28   6.7  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    28   6.7  
AL033514-37|CAA22087.2|  441|Caenorhabditis elegans Hypothetical...    27   8.8  

>AL132904-14|CAC35847.2|  258|Caenorhabditis elegans Hypothetical
           protein Y111B2A.18 protein.
          Length = 258

 Score =  108 bits (260), Expect = 3e-24
 Identities = 45/60 (75%), Positives = 55/60 (91%)
 Frame = +3

Query: 474 YRVLVTGLPPSGSWQDLKDHMREAGDVCFADTFKDGSGVVEFLRHEDMKYAVKKLDDSXF 653
           YRV+V GLPP+GSWQDLKDHMR+AGDVC+AD  +DG+GVVEF R+ED+KYAV+KLDD+ F
Sbjct: 123 YRVIVEGLPPTGSWQDLKDHMRDAGDVCYADVARDGTGVVEFTRYEDVKYAVRKLDDTKF 182



 Score = 38.3 bits (85), Expect = 0.005
 Identities = 14/26 (53%), Positives = 21/26 (80%)
 Frame = +1

Query: 214 FTTFGKVTFVDLKNRKGPPFAFVEFE 291
           F  +G++ +VD+K+ +GP FAFVEFE
Sbjct: 29  FHKYGRIKYVDIKSGRGPAFAFVEFE 54



 Score = 35.5 bits (78), Expect = 0.033
 Identities = 11/21 (52%), Positives = 19/21 (90%)
 Frame = +3

Query: 156 RIYVGNLPPDIRTKDIQDLFY 218
           ++YVGNLP D+R K+++D+F+
Sbjct: 10  KVYVGNLPGDVREKEVEDIFH 30


>AF242767-1|AAG36874.1|  258|Caenorhabditis elegans SF2 protein.
          Length = 258

 Score =  108 bits (260), Expect = 3e-24
 Identities = 45/60 (75%), Positives = 55/60 (91%)
 Frame = +3

Query: 474 YRVLVTGLPPSGSWQDLKDHMREAGDVCFADTFKDGSGVVEFLRHEDMKYAVKKLDDSXF 653
           YRV+V GLPP+GSWQDLKDHMR+AGDVC+AD  +DG+GVVEF R+ED+KYAV+KLDD+ F
Sbjct: 123 YRVIVEGLPPTGSWQDLKDHMRDAGDVCYADVARDGTGVVEFTRYEDVKYAVRKLDDTKF 182



 Score = 38.3 bits (85), Expect = 0.005
 Identities = 14/26 (53%), Positives = 21/26 (80%)
 Frame = +1

Query: 214 FTTFGKVTFVDLKNRKGPPFAFVEFE 291
           F  +G++ +VD+K+ +GP FAFVEFE
Sbjct: 29  FHKYGRIKYVDIKSGRGPAFAFVEFE 54



 Score = 35.5 bits (78), Expect = 0.033
 Identities = 11/21 (52%), Positives = 19/21 (90%)
 Frame = +3

Query: 156 RIYVGNLPPDIRTKDIQDLFY 218
           ++YVGNLP D+R K+++D+F+
Sbjct: 10  KVYVGNLPGDVREKEVEDIFH 30


>Z66521-8|CAA91394.1|  281|Caenorhabditis elegans Hypothetical
           protein W02B12.2 protein.
          Length = 281

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
 Frame = +3

Query: 474 YRVLVTGLPPSGSWQDLKDHMREAG-DVCFADTFKD--GSGVVEFLRHEDMKYAVKKL 638
           +R+++  L    SWQD+KDH+R+ G +  +++  K      +V F  H+D++ A+ KL
Sbjct: 112 FRLVIDNLSTRYSWQDIKDHIRKLGIEPTYSEAHKRNVNQAIVCFTSHDDLRDAMNKL 169


>Z66521-2|CAA91395.1|  312|Caenorhabditis elegans Hypothetical
           protein W02B12.3a protein.
          Length = 312

 Score = 35.5 bits (78), Expect = 0.033
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = +3

Query: 474 YRVLVTGLPPSGSWQDLKDHMREAG-DVCFADTFK-DGSGVVEFLRHEDMKYAVKKLD 641
           +RV+V  L    SWQDLKD +R  G +  +A+  K     ++ F    D+K  ++K D
Sbjct: 129 HRVVVENLSSRISWQDLKDQVRRQGVEPTYAEAHKRPNEALLCFATPSDLKRCIEKCD 186


>Z82266-4|CAB05180.1|  227|Caenorhabditis elegans Hypothetical
           protein F23B2.6 protein.
          Length = 227

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 15/41 (36%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
 Frame = +3

Query: 123 SGGSSSNRNECRIYVGNLPPDIRTKDIQDLF--YNVRKSNV 239
           +GGSS++  + RI + NL   + + D+Q+LF  +N+ K +V
Sbjct: 70  AGGSSNDNKQVRINISNLAETVISSDLQELFGAFNLHKVSV 110


>Z81038-2|CAB02757.1|  454|Caenorhabditis elegans Hypothetical
           protein C25A1.4 protein.
          Length = 454

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +3

Query: 480 VLVTGLPPSGSWQDLKDHMREAGDVCFADTFKDGSGVVEFLRHEDMKYA 626
           +++  LP   +WQ ++D +R  G+V   D    G+  + F   +D + A
Sbjct: 387 IIIRNLPSDYTWQIVRDRVRNFGEVDSVDMMAPGAARIRFATFQDAERA 435


>U23172-15|AAN63408.1|  374|Caenorhabditis elegans Hypothetical
           protein F25B5.7d protein.
          Length = 374

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 9/21 (42%), Positives = 18/21 (85%)
 Frame = +3

Query: 153 CRIYVGNLPPDIRTKDIQDLF 215
           CR++VGNLP +++  ++++LF
Sbjct: 116 CRLFVGNLPNEVKETELKELF 136


>U23172-14|AAL02495.1|  165|Caenorhabditis elegans Hypothetical
           protein F25B5.7b protein.
          Length = 165

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 9/21 (42%), Positives = 18/21 (85%)
 Frame = +3

Query: 153 CRIYVGNLPPDIRTKDIQDLF 215
           CR++VGNLP +++  ++++LF
Sbjct: 116 CRLFVGNLPNEVKETELKELF 136


>U23172-12|ABH03526.1|  562|Caenorhabditis elegans Hypothetical
           protein F25B5.7a protein.
          Length = 562

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 9/21 (42%), Positives = 18/21 (85%)
 Frame = +3

Query: 153 CRIYVGNLPPDIRTKDIQDLF 215
           CR++VGNLP +++  ++++LF
Sbjct: 116 CRLFVGNLPNEVKETELKELF 136


>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
            protein 1 protein.
          Length = 4568

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 86   VYLLLCWLHRLISPIRRFT 30
            +YLL+CWLH L+    R+T
Sbjct: 4127 LYLLVCWLHALVQERLRYT 4145


>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
            protein.
          Length = 4568

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 86   VYLLLCWLHRLISPIRRFT 30
            +YLL+CWLH L+    R+T
Sbjct: 4127 LYLLVCWLHALVQERLRYT 4145


>Z32680-3|CAA83598.1|  317|Caenorhabditis elegans Hypothetical
           protein C28A5.3 protein.
          Length = 317

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +3

Query: 537 REAGDVCFADTFKDGSGVVEFLRHEDMKYAVKKLD 641
           RE G   FADTFK G    + L+  D K  V+K D
Sbjct: 156 REEGG--FADTFKVGPHAAQILKSFDKKSGVEKFD 188


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
 Frame = +3

Query: 480 VLVTGLPPSGSWQDLKDHMREAGDVCFADTFKD-------GSGVVEFLRHEDMKYAVKKL 638
           + V GL    S   L + M +AG V   +  KD       G G VEF+  ED  YA+K L
Sbjct: 15  IYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKIL 74

Query: 639 D 641
           +
Sbjct: 75  N 75


>U58726-3|AAB00577.1|  357|Caenorhabditis elegans Hypothetical
           protein T01C8.4 protein.
          Length = 357

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 189 LCPVVSFQHIYDTHFCCYCFHPT 121
           L  V+S + IY ++ CC C++PT
Sbjct: 119 LAQVLSMKTIYVSNPCCLCYNPT 141


>U29488-13|AAA68780.1| 1599|Caenorhabditis elegans Hypothetical
           protein C56C10.12 protein.
          Length = 1599

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 228 SERCKTSLEYPLSLCPVVSFQHIYDTHFC 142
           SE C++  EY L     +S   IYDT  C
Sbjct: 660 SEECRSRCEYALRSNKKMSIHEIYDTPIC 688


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
 Frame = +3

Query: 480 VLVTGLPPSGSWQDLKDHMREAGDVCFADTFKD-------GSGVVEFLRHEDMKYAVKKL 638
           + V GL    S   L + M +AG V   +  KD       G G VEF+  ED  YA+K L
Sbjct: 25  IYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKIL 84

Query: 639 D 641
           +
Sbjct: 85  N 85


>AL033514-37|CAA22087.2|  441|Caenorhabditis elegans Hypothetical
           protein Y75B8A.27 protein.
          Length = 441

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -2

Query: 245 STNVTFPNVVKQVLNILCPYVRW*VSNIYTTLISVATASTRHYRLKNII 99
           S N T  N+  Q  N L PYV+  ++     LIS A +  +  +L+ +I
Sbjct: 376 SKNCTITNLWTQCWNSLLPYVKTIINYNQDNLISFAQSRGQEKQLQQLI 424


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,162,147
Number of Sequences: 27780
Number of extensions: 242657
Number of successful extensions: 818
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)