Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_N08
         (629 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po...    44   2e-05
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc...    29   0.73 
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces...    28   0.97 
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    26   3.9  
SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces p...    26   3.9  
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   5.2  
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    25   6.8  
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    25   6.8  

>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 43.6 bits (98), Expect = 2e-05
 Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
 Frame = +2

Query: 500 YRVLVTGLPPSGSWQDLKDHMREAGDVCFAXTFKD--GSGVVEF 625
           +R++V  L    SWQDLKD MR+AG+  F    ++  G+GVVEF
Sbjct: 98  FRLIVENLSEDVSWQDLKDVMRKAGEPTFTDAHRENPGAGVVEF 141



 Score = 27.5 bits (58), Expect = 1.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 174 NECRIYVGNLPPDIRTKDIQDLF 242
           +E R++VG +PP    +D+ D F
Sbjct: 2   SETRLFVGRIPPQATREDMMDFF 24


>SPAC328.05 |||RNA-binding protein involved in export of
           mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 28.7 bits (61), Expect = 0.73
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +2

Query: 515 TGLPPSGSWQDLKDHMREAGDV 580
           T LP +  WQDLKD  R+AG V
Sbjct: 188 TLLPYNVRWQDLKDLFRQAGSV 209


>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 609

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 177 ECRIYVGNLPPDIRTKDIQDLF 242
           E  IYVGNLP   ++ D+ +LF
Sbjct: 19  EISIYVGNLPSTCQSSDLHELF 40


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 186 IYVGNLPPDIRTKDIQDLF 242
           IYVGNLPP    ++++ LF
Sbjct: 428 IYVGNLPPSTSEEELKVLF 446


>SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 506

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 12/49 (24%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = -3

Query: 315 KFHEREWRTFSVL*VNERYFSERCKTSLEYPLSLCPVVSFQ---HIYDT 178
           +++++ WRT   +  ++  F+++ K  LE+    C  V+ +    IY+T
Sbjct: 279 EWYQKGWRTIEQVRKHKDSFTKQIKVGLEFYEDFCKTVTIEEATEIYET 327


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +3

Query: 180 CRIYVGNLPPDIRTKDIQDLF 242
           C +YVGN+P ++  + + D+F
Sbjct: 5   CVVYVGNIPYEMAEEQVIDIF 25


>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
           Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +3

Query: 219 TKDIQDLFYNVRKSNVR*PKEQKRSAIRVR 308
           T+D  DL YN        PKE+  SAI VR
Sbjct: 40  TQDSNDLQYNAHLFKSSNPKEEYDSAIDVR 69


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +3

Query: 183 RIYVGNLPPDIRTKDIQDLF--YNVRKSNVR*PKEQKRSA 296
           +I + NLP +   KD+Q L   Y   +S VR PK+  RSA
Sbjct: 722 KILIKNLPFEATKKDVQSLLGAYGQLRS-VRVPKKFDRSA 760


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,173,107
Number of Sequences: 5004
Number of extensions: 33889
Number of successful extensions: 90
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)