Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_N08
(629 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0967 + 12786219-12786305,12786716-12786781,12786897-127869... 77 2e-14
05_04_0028 + 17302359-17302445,17303887-17303952,17305415-173054... 76 3e-14
01_03_0047 + 11939747-11939857,11940058-11940121,11940123-119402... 73 2e-13
07_03_1654 - 28416487-28416548,28416791-28416824,28418156-284182... 72 3e-13
01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748,332... 34 0.11
11_06_0418 - 23317077-23317343,23317614-23317787,23317886-233179... 29 3.0
05_01_0112 - 757514-758444,758525-758571,759074-759236,759861-76... 29 4.0
03_01_0160 + 1302366-1302731,1303318-1303364,1303455-1303800 29 4.0
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 29 4.0
09_06_0308 - 22199389-22199451,22199604-22199924,22200178-222004... 28 5.3
08_02_1559 - 27873345-27873407,27873549-27873830,27874162-278742... 28 5.3
02_04_0577 - 24011542-24011906,24012285-24012385,24013029-240132... 28 5.3
05_01_0455 - 3614011-3614503,3615007-3615072,3615154-3615347,361... 28 7.0
06_01_0613 + 4439829-4439917,4440650-4440738,4441219-4441453,444... 27 9.3
05_03_0025 + 7462272-7462412,7462865-7463032 27 9.3
01_07_0160 - 41563109-41563468,41563566-41563985,41564082-415642... 27 9.3
>03_02_0967 +
12786219-12786305,12786716-12786781,12786897-12786971,
12787054-12787162,12787253-12787299,12787396-12787453,
12788193-12788242,12788459-12788504,12788758-12788808,
12789376-12789478,12789923-12789956,12790210-12790224
Length = 246
Score = 76.6 bits (180), Expect = 2e-14
Identities = 39/87 (44%), Positives = 47/87 (54%)
Frame = +2
Query: 359 GYDYDGYRLRVEFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPPSGS 538
GY++DG+RLRVE EYRVLVTGLP S S
Sbjct: 67 GYNFDGHRLRVE---PAHGGRGNGGSSFDRPSNFGGGGRRGVSRHSEYRVLVTGLPSSAS 123
Query: 539 WQDLKDHMREAGDVCFAXTFKDGSGVV 619
WQDLKDHMR+AGDVCF+ +++G G V
Sbjct: 124 WQDLKDHMRKAGDVCFSEVYREGGGTV 150
Score = 37.1 bits (82), Expect = 0.011
Identities = 14/20 (70%), Positives = 18/20 (90%)
Frame = +3
Query: 186 IYVGNLPPDIRTKDIQDLFY 245
IYVGNLP DIR ++++DLFY
Sbjct: 9 IYVGNLPGDIREREVEDLFY 28
>05_04_0028 +
17302359-17302445,17303887-17303952,17305415-17305489,
17305638-17305737,17305819-17305865,17305937-17305994,
17306161-17306210,17306417-17306473,17306561-17306703,
17306793-17306834,17307083-17307124,17308239-17308272,
17308342-17308443,17310373-17310652,17311202-17311332,
17311676-17311773,17312525-17312717
Length = 534
Score = 75.8 bits (178), Expect = 3e-14
Identities = 37/88 (42%), Positives = 46/88 (52%)
Frame = +2
Query: 356 HGYDYDGYRLRVEFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPPSG 535
HGYD+DG+RLRVE +YRV+VTGLP S
Sbjct: 66 HGYDFDGHRLRVELAHGGRGPSFDRSSSYSSAGRRGAAKRT------DYRVMVTGLPSSA 119
Query: 536 SWQDLKDHMREAGDVCFAXTFKDGSGVV 619
SWQDLKDHMR AGDVCF+ +++G +
Sbjct: 120 SWQDLKDHMRRAGDVCFSDVYREGGATI 147
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/25 (64%), Positives = 20/25 (80%)
Frame = +3
Query: 171 RNECRIYVGNLPPDIRTKDIQDLFY 245
RN IYVGNLP DIR ++++DLFY
Sbjct: 4 RNSRTIYVGNLPGDIREREVEDLFY 28
>01_03_0047 +
11939747-11939857,11940058-11940121,11940123-11940253,
11940325-11940432,11942735-11942783,11943188-11943279,
11944394-11944468,11944553-11944658,11944740-11944786,
11944856-11944913,11945299-11945348,11945728-11945784,
11945909-11945916,11946020-11946055,11946904-11946937,
11947030-11947092,11947223-11947237
Length = 367
Score = 72.5 bits (170), Expect = 2e-13
Identities = 37/87 (42%), Positives = 44/87 (50%)
Frame = +2
Query: 359 GYDYDGYRLRVEFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPPSGS 538
GY++DGYRLRVE EYRV+VTGLP S S
Sbjct: 201 GYNFDGYRLRVELAHGGRGQSYSYDRPRSYSSGRRGGVSRRS----EYRVMVTGLPSSAS 256
Query: 539 WQDLKDHMREAGDVCFAXTFKDGSGVV 619
WQDLKDHMR AGDVCF+ +++ V
Sbjct: 257 WQDLKDHMRRAGDVCFSDVYREAGATV 283
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/25 (64%), Positives = 20/25 (80%)
Frame = +3
Query: 171 RNECRIYVGNLPPDIRTKDIQDLFY 245
RN IYVGNLP DIR ++++DLFY
Sbjct: 160 RNSRTIYVGNLPGDIREREVEDLFY 184
>07_03_1654 -
28416487-28416548,28416791-28416824,28418156-28418212,
28418401-28418450,28418968-28419025,28419136-28419182,
28419278-28419377,28419446-28419586,28419715-28419780,
28420024-28420118,28420440-28420629
Length = 299
Score = 72.1 bits (169), Expect = 3e-13
Identities = 37/87 (42%), Positives = 45/87 (51%)
Frame = +2
Query: 359 GYDYDGYRLRVEFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPPSGS 538
GY++DG RLRVE EYRVLVTGLP S S
Sbjct: 155 GYNFDGNRLRVELAHGGRGNSSSFNNSGGGGRRGGVSRHT------EYRVLVTGLPSSAS 208
Query: 539 WQDLKDHMREAGDVCFAXTFKDGSGVV 619
WQDLKDHMR AGDVC++ +++G G +
Sbjct: 209 WQDLKDHMRNAGDVCYSEVYREGGGTI 235
Score = 37.1 bits (82), Expect = 0.011
Identities = 14/20 (70%), Positives = 18/20 (90%)
Frame = +3
Query: 186 IYVGNLPPDIRTKDIQDLFY 245
IYVGNLP DIR ++++DLFY
Sbjct: 75 IYVGNLPGDIREREVEDLFY 94
>01_01_0446 +
3321832-3322232,3322398-3322455,3322810-3323748,
3324504-3324654,3324740-3324818,3325826-3325934
Length = 578
Score = 33.9 bits (74), Expect = 0.11
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = +3
Query: 174 NECRIYVGNLPPDIRTKDIQDLF 242
+ RIY+ NLPPD+ +++Q+LF
Sbjct: 439 DNARIYISNLPPDVTVEELQELF 461
>11_06_0418 -
23317077-23317343,23317614-23317787,23317886-23317971,
23318125-23318244,23318338-23318368,23318457-23318532,
23318672-23318759,23318877-23318938,23319041-23319117,
23319890-23319992,23320237-23320298,23321116-23321289,
23322160-23322405
Length = 521
Score = 29.1 bits (62), Expect = 3.0
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +3
Query: 186 IYVGNLPPDIRTKDIQDLFYNV 251
+YVGNLP D+ + D+ F+++
Sbjct: 367 VYVGNLPHDVNSNDVHRFFHSL 388
>05_01_0112 -
757514-758444,758525-758571,759074-759236,759861-760366
Length = 548
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3
Query: 183 RIYVGNLPPDIRTKDIQDLFYNVRKSNVR 269
R+YVGNL DI D++ F + + S++R
Sbjct: 268 RVYVGNLAWDITEDDLKKFFSDCKISSIR 296
>03_01_0160 + 1302366-1302731,1303318-1303364,1303455-1303800
Length = 252
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +3
Query: 189 YVGNLPPDIRTKDIQDLFYNVRKSNVR 269
YVGNL D+ D++D F +++ S++R
Sbjct: 176 YVGNLKWDVTETDLRDFFKSLKISSIR 202
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 183 RIYVGNLPPDIRTKDIQDLF 242
R+YVG L RT+D++DLF
Sbjct: 19 RLYVGRLSSRTRTRDLEDLF 38
>09_06_0308 -
22199389-22199451,22199604-22199924,22200178-22200423,
22202152-22203337,22203487-22203551,22204205-22204486,
22205005-22205106,22205587-22206105
Length = 927
Score = 28.3 bits (60), Expect = 5.3
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 177 ECRIYVGNLPPDIRTKDIQDLF 242
E ++YVGNLP DI ++ + LF
Sbjct: 142 EAKVYVGNLPYDIDSERLAQLF 163
>08_02_1559 -
27873345-27873407,27873549-27873830,27874162-27874263,
27874402-27874872
Length = 305
Score = 28.3 bits (60), Expect = 5.3
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +3
Query: 177 ECRIYVGNLPPDIRTKDIQDLF 242
E ++YVGNLP D+ ++ + LF
Sbjct: 126 EAKVYVGNLPYDVDSEGLAQLF 147
>02_04_0577 -
24011542-24011906,24012285-24012385,24013029-24013287,
24014176-24014264,24015331-24015419
Length = 300
Score = 28.3 bits (60), Expect = 5.3
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 183 RIYVGNLPPDIRTKDIQDLF 242
R+YVGNL P + ++I+D F
Sbjct: 3 RVYVGNLDPRVTAREIEDEF 22
>05_01_0455 -
3614011-3614503,3615007-3615072,3615154-3615347,
3615562-3615657,3615790-3615829,3616729-3616856
Length = 338
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +1
Query: 241 FTTFGKVTFVDLKNRKGPPFAFVEF 315
F+ +G+V FVDLKN G FVEF
Sbjct: 38 FSRYGRVRFVDLKNEYG----FVEF 58
>06_01_0613 +
4439829-4439917,4440650-4440738,4441219-4441453,
4441768-4441771,4441829-4441930
Length = 172
Score = 27.5 bits (58), Expect = 9.3
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +3
Query: 183 RIYVGNLPPDIRTKDIQDLF 242
R+YVGNL P + ++++D F
Sbjct: 3 RVYVGNLDPRVTARELEDEF 22
>05_03_0025 + 7462272-7462412,7462865-7463032
Length = 102
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 177 ECRIYVGNLPPDIRTKDIQDLFYN 248
E R+YVGNLP + ++D F N
Sbjct: 17 EYRVYVGNLPFSANDRSLKDSFAN 40
>01_07_0160 -
41563109-41563468,41563566-41563985,41564082-41564263,
41564362-41564542,41565066-41565084,41565185-41565445,
41566140-41566253,41566264-41566331,41566890-41567018,
41567141-41567245,41567317-41567456,41567519-41567687,
41567824-41567900,41568133-41568187,41568660-41568705,
41568806-41568894,41568996-41569061,41569360-41569425,
41569817-41569906,41570009-41570026
Length = 884
Score = 27.5 bits (58), Expect = 9.3
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +3
Query: 183 RIYVGNLPPDIRTKDIQDLFYNV-RKSNVR*PKEQKRSAIR 302
+I+VG LP + T+D++ F R + PK+ KRS R
Sbjct: 240 KIFVGRLPQEANTEDLRHYFGKFGRIVDAYIPKDPKRSGHR 280
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,329,829
Number of Sequences: 37544
Number of extensions: 224633
Number of successful extensions: 614
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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