Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_N08
(629 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M72709-2|AAA35565.1| 248|Homo sapiens protein ( Human alternati... 95 2e-19
M72709-1|AAA35564.1| 292|Homo sapiens protein ( Human alternati... 95 2e-19
M69040-1|AAA03476.1| 248|Homo sapiens SF2p33 protein. 95 2e-19
BC033785-1|AAH33785.1| 201|Homo sapiens SFRS1 protein protein. 95 2e-19
BC010264-1|AAH10264.1| 248|Homo sapiens splicing factor, argini... 95 2e-19
AB209558-1|BAD92795.1| 233|Homo sapiens splicing factor, argini... 95 2e-19
AB062124-1|BAB93456.1| 248|Homo sapiens OK/SW-cl.3 protein. 95 2e-19
U87279-1|AAD00626.1| 221|Homo sapiens splicing factor SRp30c pr... 81 3e-15
U30825-1|AAA93069.1| 221|Homo sapiens SRp30c protein. 81 3e-15
BC093973-1|AAH93973.1| 221|Homo sapiens splicing factor, argini... 81 3e-15
BC093971-1|AAH93971.1| 221|Homo sapiens splicing factor, argini... 81 3e-15
AL021546-5|CAA16498.1| 221|Homo sapiens splicing factor, argini... 81 3e-15
L14076-1|AAA36649.1| 494|Homo sapiens pre-mRNA splicing factor ... 49 1e-05
BT007415-1|AAP36083.1| 494|Homo sapiens splicing factor, argini... 49 1e-05
BC002781-1|AAH02781.1| 494|Homo sapiens splicing factor, argini... 49 1e-05
AL590729-1|CAI14326.1| 494|Homo sapiens splicing factor, argini... 49 1e-05
AL357500-1|CAH71635.1| 494|Homo sapiens splicing factor, argini... 49 1e-05
AK223444-1|BAD97164.1| 382|Homo sapiens splicing factor, argini... 49 1e-05
AC004236-1|AAC04476.1| 192|Homo sapiens SRP0001LB protein. 49 1e-05
AB209856-1|BAD93093.1| 419|Homo sapiens splicing factor, argini... 49 1e-05
U30883-1|AAA93073.1| 344|Homo sapiens SRp55-1 protein. 49 2e-05
U30829-1|AAA93072.1| 335|Homo sapiens SRp55-3 protein. 49 2e-05
BC006832-1|AAH06832.1| 344|Homo sapiens splicing factor, argini... 49 2e-05
AL031681-3|CAB43960.1| 344|Homo sapiens splicing factor, argini... 49 2e-05
AB208976-1|BAD92213.1| 279|Homo sapiens arginine/serine-rich sp... 49 2e-05
U30826-1|AAA93070.1| 272|Homo sapiens SRp40-1 protein. 44 3e-04
BT007089-1|AAP35752.1| 272|Homo sapiens splicing factor, argini... 44 3e-04
BC040209-1|AAH40209.1| 272|Homo sapiens splicing factor, argini... 44 3e-04
BC018823-1|AAH18823.1| 272|Homo sapiens splicing factor, argini... 44 3e-04
AK023133-1|BAB14421.1| 576|Homo sapiens protein ( Homo sapiens ... 37 0.051
AF106685-1|AAD43038.1| 547|Homo sapiens myelin gene expression ... 37 0.051
AB037762-1|BAA92579.1| 620|Homo sapiens KIAA1341 protein protein. 37 0.051
L32611-1|AAL31359.1| 691|Homo sapiens ribonucleoprotein protein. 32 1.5
L03532-1|AAA36192.1| 729|Homo sapiens M4 protein protein. 32 1.5
BC019580-1|AAH19580.1| 730|Homo sapiens heterogeneous nuclear r... 32 1.5
BC000138-1|AAH00138.2| 730|Homo sapiens heterogeneous nuclear r... 32 1.5
AF061832-1|AAC16002.1| 691|Homo sapiens M4 protein deletion mut... 32 1.5
CR457272-1|CAG33553.1| 357|Homo sapiens PSPC1 protein. 32 1.9
BC014184-1|AAH14184.2| 393|Homo sapiens PSPC1 protein protein. 32 1.9
AL354808-5|CAI41005.1| 248|Homo sapiens paraspeckle component 1... 32 1.9
AL354808-4|CAI41004.1| 523|Homo sapiens paraspeckle component 1... 32 1.9
AK001817-1|BAA91924.1| 357|Homo sapiens protein ( Homo sapiens ... 32 1.9
AF449627-1|AAL59602.1| 393|Homo sapiens paraspeckle protein 1 b... 32 1.9
AF448795-1|AAL59601.1| 523|Homo sapiens paraspeckle protein 1 a... 32 1.9
AB209804-1|BAD93041.1| 326|Homo sapiens CS0DF038YO05 variant pr... 32 1.9
Y11289-1|CAA72157.1| 471|Homo sapiens p54nrb protein. 31 3.4
U89867-1|AAC51852.1| 471|Homo sapiens nuclear matrix protein 55... 31 3.4
U02493-1|AAA03427.1| 471|Homo sapiens 54 kDa protein protein. 31 3.4
L14599-1|AAC37578.1| 471|Homo sapiens protein ( Human mRNA, com... 31 3.4
CR456761-1|CAG33042.1| 471|Homo sapiens NONO protein. 31 3.4
BC069639-1|AAH69639.1| 471|Homo sapiens non-POU domain containi... 31 3.4
BC069616-1|AAH69616.1| 471|Homo sapiens non-POU domain containi... 31 3.4
BC028299-1|AAH28299.1| 471|Homo sapiens non-POU domain containi... 31 3.4
BC012141-1|AAH12141.1| 471|Homo sapiens NONO protein protein. 31 3.4
BC003129-1|AAH03129.1| 471|Homo sapiens NONO protein protein. 31 3.4
BC002364-1|AAH02364.1| 471|Homo sapiens non-POU domain containi... 31 3.4
>M72709-2|AAA35565.1| 248|Homo sapiens protein ( Human alternative
splicing factor mRNA, complete cds. ).
Length = 248
Score = 95.1 bits (226), Expect = 2e-19
Identities = 47/90 (52%), Positives = 54/90 (60%)
Frame = +2
Query: 359 GYDYDGYRLRVEFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPPSGS 538
GYDYDGYRLRVEF E RV+V+GLPPSGS
Sbjct: 76 GYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRS--ENRVVVSGLPPSGS 133
Query: 539 WQDLKDHMREAGDVCFAXTFKDGSGVVEFL 628
WQDLKDHMREAGDVC+A ++DG+GVVEF+
Sbjct: 134 WQDLKDHMREAGDVCYADVYRDGTGVVEFV 163
Score = 54.0 bits (124), Expect = 4e-07
Identities = 21/24 (87%), Positives = 24/24 (100%)
Frame = +3
Query: 174 NECRIYVGNLPPDIRTKDIQDLFY 245
N+CRIYVGNLPPDIRTKDI+D+FY
Sbjct: 14 NDCRIYVGNLPPDIRTKDIEDVFY 37
Score = 38.7 bits (86), Expect = 0.017
Identities = 17/27 (62%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
Frame = +1
Query: 241 FTTFGKVTFVDLKNRKG-PPFAFVEFE 318
F +G + +DLKNR+G PPFAFVEFE
Sbjct: 36 FYKYGAIRDIDLKNRRGGPPFAFVEFE 62
>M72709-1|AAA35564.1| 292|Homo sapiens protein ( Human alternative
splicing factor mRNA, complete cds. ).
Length = 292
Score = 95.1 bits (226), Expect = 2e-19
Identities = 47/90 (52%), Positives = 54/90 (60%)
Frame = +2
Query: 359 GYDYDGYRLRVEFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPPSGS 538
GYDYDGYRLRVEF E RV+V+GLPPSGS
Sbjct: 76 GYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRS--ENRVVVSGLPPSGS 133
Query: 539 WQDLKDHMREAGDVCFAXTFKDGSGVVEFL 628
WQDLKDHMREAGDVC+A ++DG+GVVEF+
Sbjct: 134 WQDLKDHMREAGDVCYADVYRDGTGVVEFV 163
Score = 54.0 bits (124), Expect = 4e-07
Identities = 21/24 (87%), Positives = 24/24 (100%)
Frame = +3
Query: 174 NECRIYVGNLPPDIRTKDIQDLFY 245
N+CRIYVGNLPPDIRTKDI+D+FY
Sbjct: 14 NDCRIYVGNLPPDIRTKDIEDVFY 37
Score = 38.7 bits (86), Expect = 0.017
Identities = 17/27 (62%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
Frame = +1
Query: 241 FTTFGKVTFVDLKNRKG-PPFAFVEFE 318
F +G + +DLKNR+G PPFAFVEFE
Sbjct: 36 FYKYGAIRDIDLKNRRGGPPFAFVEFE 62
>M69040-1|AAA03476.1| 248|Homo sapiens SF2p33 protein.
Length = 248
Score = 95.1 bits (226), Expect = 2e-19
Identities = 47/90 (52%), Positives = 54/90 (60%)
Frame = +2
Query: 359 GYDYDGYRLRVEFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPPSGS 538
GYDYDGYRLRVEF E RV+V+GLPPSGS
Sbjct: 76 GYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRS--ENRVVVSGLPPSGS 133
Query: 539 WQDLKDHMREAGDVCFAXTFKDGSGVVEFL 628
WQDLKDHMREAGDVC+A ++DG+GVVEF+
Sbjct: 134 WQDLKDHMREAGDVCYADVYRDGTGVVEFV 163
Score = 54.0 bits (124), Expect = 4e-07
Identities = 21/24 (87%), Positives = 24/24 (100%)
Frame = +3
Query: 174 NECRIYVGNLPPDIRTKDIQDLFY 245
N+CRIYVGNLPPDIRTKDI+D+FY
Sbjct: 14 NDCRIYVGNLPPDIRTKDIEDVFY 37
Score = 38.7 bits (86), Expect = 0.017
Identities = 17/27 (62%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
Frame = +1
Query: 241 FTTFGKVTFVDLKNRKG-PPFAFVEFE 318
F +G + +DLKNR+G PPFAFVEFE
Sbjct: 36 FYKYGAIRDIDLKNRRGGPPFAFVEFE 62
>BC033785-1|AAH33785.1| 201|Homo sapiens SFRS1 protein protein.
Length = 201
Score = 95.1 bits (226), Expect = 2e-19
Identities = 47/90 (52%), Positives = 54/90 (60%)
Frame = +2
Query: 359 GYDYDGYRLRVEFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPPSGS 538
GYDYDGYRLRVEF E RV+V+GLPPSGS
Sbjct: 76 GYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRS--ENRVVVSGLPPSGS 133
Query: 539 WQDLKDHMREAGDVCFAXTFKDGSGVVEFL 628
WQDLKDHMREAGDVC+A ++DG+GVVEF+
Sbjct: 134 WQDLKDHMREAGDVCYADVYRDGTGVVEFV 163
Score = 54.0 bits (124), Expect = 4e-07
Identities = 21/24 (87%), Positives = 24/24 (100%)
Frame = +3
Query: 174 NECRIYVGNLPPDIRTKDIQDLFY 245
N+CRIYVGNLPPDIRTKDI+D+FY
Sbjct: 14 NDCRIYVGNLPPDIRTKDIEDVFY 37
Score = 38.7 bits (86), Expect = 0.017
Identities = 17/27 (62%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
Frame = +1
Query: 241 FTTFGKVTFVDLKNRKG-PPFAFVEFE 318
F +G + +DLKNR+G PPFAFVEFE
Sbjct: 36 FYKYGAIRDIDLKNRRGGPPFAFVEFE 62
>BC010264-1|AAH10264.1| 248|Homo sapiens splicing factor,
arginine/serine-rich 1 (splicing factor 2, alternate
splicing protein.
Length = 248
Score = 95.1 bits (226), Expect = 2e-19
Identities = 47/90 (52%), Positives = 54/90 (60%)
Frame = +2
Query: 359 GYDYDGYRLRVEFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPPSGS 538
GYDYDGYRLRVEF E RV+V+GLPPSGS
Sbjct: 76 GYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRS--ENRVVVSGLPPSGS 133
Query: 539 WQDLKDHMREAGDVCFAXTFKDGSGVVEFL 628
WQDLKDHMREAGDVC+A ++DG+GVVEF+
Sbjct: 134 WQDLKDHMREAGDVCYADVYRDGTGVVEFV 163
Score = 54.0 bits (124), Expect = 4e-07
Identities = 21/24 (87%), Positives = 24/24 (100%)
Frame = +3
Query: 174 NECRIYVGNLPPDIRTKDIQDLFY 245
N+CRIYVGNLPPDIRTKDI+D+FY
Sbjct: 14 NDCRIYVGNLPPDIRTKDIEDVFY 37
Score = 38.7 bits (86), Expect = 0.017
Identities = 17/27 (62%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
Frame = +1
Query: 241 FTTFGKVTFVDLKNRKG-PPFAFVEFE 318
F +G + +DLKNR+G PPFAFVEFE
Sbjct: 36 FYKYGAIRDIDLKNRRGGPPFAFVEFE 62
>AB209558-1|BAD92795.1| 233|Homo sapiens splicing factor,
arginine/serine-rich 1 (splicing factor 2, alternate
splicing protein.
Length = 233
Score = 95.1 bits (226), Expect = 2e-19
Identities = 47/90 (52%), Positives = 54/90 (60%)
Frame = +2
Query: 359 GYDYDGYRLRVEFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPPSGS 538
GYDYDGYRLRVEF E RV+V+GLPPSGS
Sbjct: 108 GYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRS--ENRVVVSGLPPSGS 165
Query: 539 WQDLKDHMREAGDVCFAXTFKDGSGVVEFL 628
WQDLKDHMREAGDVC+A ++DG+GVVEF+
Sbjct: 166 WQDLKDHMREAGDVCYADVYRDGTGVVEFV 195
Score = 54.0 bits (124), Expect = 4e-07
Identities = 21/24 (87%), Positives = 24/24 (100%)
Frame = +3
Query: 174 NECRIYVGNLPPDIRTKDIQDLFY 245
N+CRIYVGNLPPDIRTKDI+D+FY
Sbjct: 46 NDCRIYVGNLPPDIRTKDIEDVFY 69
Score = 38.7 bits (86), Expect = 0.017
Identities = 17/27 (62%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
Frame = +1
Query: 241 FTTFGKVTFVDLKNRKG-PPFAFVEFE 318
F +G + +DLKNR+G PPFAFVEFE
Sbjct: 68 FYKYGAIRDIDLKNRRGGPPFAFVEFE 94
>AB062124-1|BAB93456.1| 248|Homo sapiens OK/SW-cl.3 protein.
Length = 248
Score = 95.1 bits (226), Expect = 2e-19
Identities = 47/90 (52%), Positives = 54/90 (60%)
Frame = +2
Query: 359 GYDYDGYRLRVEFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPPSGS 538
GYDYDGYRLRVEF E RV+V+GLPPSGS
Sbjct: 76 GYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRS--ENRVVVSGLPPSGS 133
Query: 539 WQDLKDHMREAGDVCFAXTFKDGSGVVEFL 628
WQDLKDHMREAGDVC+A ++DG+GVVEF+
Sbjct: 134 WQDLKDHMREAGDVCYADVYRDGTGVVEFV 163
Score = 54.0 bits (124), Expect = 4e-07
Identities = 21/24 (87%), Positives = 24/24 (100%)
Frame = +3
Query: 174 NECRIYVGNLPPDIRTKDIQDLFY 245
N+CRIYVGNLPPDIRTKDI+D+FY
Sbjct: 14 NDCRIYVGNLPPDIRTKDIEDVFY 37
Score = 38.7 bits (86), Expect = 0.017
Identities = 17/27 (62%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
Frame = +1
Query: 241 FTTFGKVTFVDLKNRKG-PPFAFVEFE 318
F +G + +DLKNR+G PPFAFVEFE
Sbjct: 36 FYKYGAIRDIDLKNRRGGPPFAFVEFE 62
>U87279-1|AAD00626.1| 221|Homo sapiens splicing factor SRp30c
protein.
Length = 221
Score = 81.0 bits (191), Expect = 3e-15
Identities = 34/44 (77%), Positives = 40/44 (90%)
Frame = +2
Query: 497 EYRVLVTGLPPSGSWQDLKDHMREAGDVCFAXTFKDGSGVVEFL 628
++RVLV+GLPPSGSWQDLKDHMREAGDVC+A KDG G+VE+L
Sbjct: 110 DFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGVGMVEYL 153
Score = 41.5 bits (93), Expect = 0.002
Identities = 16/21 (76%), Positives = 19/21 (90%)
Frame = +3
Query: 183 RIYVGNLPPDIRTKDIQDLFY 245
RIYVGNLP D+R KD++DLFY
Sbjct: 15 RIYVGNLPTDVREKDLEDLFY 35
>U30825-1|AAA93069.1| 221|Homo sapiens SRp30c protein.
Length = 221
Score = 81.0 bits (191), Expect = 3e-15
Identities = 34/44 (77%), Positives = 40/44 (90%)
Frame = +2
Query: 497 EYRVLVTGLPPSGSWQDLKDHMREAGDVCFAXTFKDGSGVVEFL 628
++RVLV+GLPPSGSWQDLKDHMREAGDVC+A KDG G+VE+L
Sbjct: 110 DFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGVGMVEYL 153
Score = 41.5 bits (93), Expect = 0.002
Identities = 16/21 (76%), Positives = 19/21 (90%)
Frame = +3
Query: 183 RIYVGNLPPDIRTKDIQDLFY 245
RIYVGNLP D+R KD++DLFY
Sbjct: 15 RIYVGNLPTDVREKDLEDLFY 35
>BC093973-1|AAH93973.1| 221|Homo sapiens splicing factor,
arginine/serine-rich 9 protein.
Length = 221
Score = 81.0 bits (191), Expect = 3e-15
Identities = 34/44 (77%), Positives = 40/44 (90%)
Frame = +2
Query: 497 EYRVLVTGLPPSGSWQDLKDHMREAGDVCFAXTFKDGSGVVEFL 628
++RVLV+GLPPSGSWQDLKDHMREAGDVC+A KDG G+VE+L
Sbjct: 110 DFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGVGMVEYL 153
Score = 41.5 bits (93), Expect = 0.002
Identities = 16/21 (76%), Positives = 19/21 (90%)
Frame = +3
Query: 183 RIYVGNLPPDIRTKDIQDLFY 245
RIYVGNLP D+R KD++DLFY
Sbjct: 15 RIYVGNLPTDVREKDLEDLFY 35
>BC093971-1|AAH93971.1| 221|Homo sapiens splicing factor,
arginine/serine-rich 9 protein.
Length = 221
Score = 81.0 bits (191), Expect = 3e-15
Identities = 34/44 (77%), Positives = 40/44 (90%)
Frame = +2
Query: 497 EYRVLVTGLPPSGSWQDLKDHMREAGDVCFAXTFKDGSGVVEFL 628
++RVLV+GLPPSGSWQDLKDHMREAGDVC+A KDG G+VE+L
Sbjct: 110 DFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGVGMVEYL 153
Score = 41.5 bits (93), Expect = 0.002
Identities = 16/21 (76%), Positives = 19/21 (90%)
Frame = +3
Query: 183 RIYVGNLPPDIRTKDIQDLFY 245
RIYVGNLP D+R KD++DLFY
Sbjct: 15 RIYVGNLPTDVREKDLEDLFY 35
>AL021546-5|CAA16498.1| 221|Homo sapiens splicing factor,
arginine/serine-rich 9 protein.
Length = 221
Score = 81.0 bits (191), Expect = 3e-15
Identities = 34/44 (77%), Positives = 40/44 (90%)
Frame = +2
Query: 497 EYRVLVTGLPPSGSWQDLKDHMREAGDVCFAXTFKDGSGVVEFL 628
++RVLV+GLPPSGSWQDLKDHMREAGDVC+A KDG G+VE+L
Sbjct: 110 DFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGVGMVEYL 153
Score = 41.5 bits (93), Expect = 0.002
Identities = 16/21 (76%), Positives = 19/21 (90%)
Frame = +3
Query: 183 RIYVGNLPPDIRTKDIQDLFY 245
RIYVGNLP D+R KD++DLFY
Sbjct: 15 RIYVGNLPTDVREKDLEDLFY 35
>L14076-1|AAA36649.1| 494|Homo sapiens pre-mRNA splicing factor
protein.
Length = 494
Score = 49.2 bits (112), Expect = 1e-05
Identities = 23/46 (50%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Frame = +2
Query: 497 EYRVLVTGLPPSGSWQDLKDHMREAGDVCFAXTFK--DGSGVVEFL 628
EYR++V L SWQDLKD+MR+AG+V +A K GV+EF+
Sbjct: 103 EYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFV 148
>BT007415-1|AAP36083.1| 494|Homo sapiens splicing factor,
arginine/serine-rich 4 protein.
Length = 494
Score = 49.2 bits (112), Expect = 1e-05
Identities = 23/46 (50%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Frame = +2
Query: 497 EYRVLVTGLPPSGSWQDLKDHMREAGDVCFAXTFK--DGSGVVEFL 628
EYR++V L SWQDLKD+MR+AG+V +A K GV+EF+
Sbjct: 103 EYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFV 148
>BC002781-1|AAH02781.1| 494|Homo sapiens splicing factor,
arginine/serine-rich 4 protein.
Length = 494
Score = 49.2 bits (112), Expect = 1e-05
Identities = 23/46 (50%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Frame = +2
Query: 497 EYRVLVTGLPPSGSWQDLKDHMREAGDVCFAXTFK--DGSGVVEFL 628
EYR++V L SWQDLKD+MR+AG+V +A K GV+EF+
Sbjct: 103 EYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFV 148
>AL590729-1|CAI14326.1| 494|Homo sapiens splicing factor,
arginine/serine-rich 4 protein.
Length = 494
Score = 49.2 bits (112), Expect = 1e-05
Identities = 23/46 (50%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Frame = +2
Query: 497 EYRVLVTGLPPSGSWQDLKDHMREAGDVCFAXTFK--DGSGVVEFL 628
EYR++V L SWQDLKD+MR+AG+V +A K GV+EF+
Sbjct: 103 EYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFV 148
>AL357500-1|CAH71635.1| 494|Homo sapiens splicing factor,
arginine/serine-rich 4 protein.
Length = 494
Score = 49.2 bits (112), Expect = 1e-05
Identities = 23/46 (50%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Frame = +2
Query: 497 EYRVLVTGLPPSGSWQDLKDHMREAGDVCFAXTFK--DGSGVVEFL 628
EYR++V L SWQDLKD+MR+AG+V +A K GV+EF+
Sbjct: 103 EYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFV 148
>AK223444-1|BAD97164.1| 382|Homo sapiens splicing factor,
arginine/serine-rich 4 variant protein.
Length = 382
Score = 49.2 bits (112), Expect = 1e-05
Identities = 23/46 (50%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Frame = +2
Query: 497 EYRVLVTGLPPSGSWQDLKDHMREAGDVCFAXTFK--DGSGVVEFL 628
EYR++V L SWQDLKD+MR+AG+V +A K GV+EF+
Sbjct: 103 EYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFV 148
>AC004236-1|AAC04476.1| 192|Homo sapiens SRP0001LB protein.
Length = 192
Score = 49.2 bits (112), Expect = 1e-05
Identities = 23/46 (50%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Frame = +2
Query: 497 EYRVLVTGLPPSGSWQDLKDHMREAGDVCFAXTFK--DGSGVVEFL 628
EYR++V L SWQDLKD+MR+AG+V +A K GV+EF+
Sbjct: 103 EYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFV 148
>AB209856-1|BAD93093.1| 419|Homo sapiens splicing factor,
arginine/serine-rich 4 variant protein.
Length = 419
Score = 49.2 bits (112), Expect = 1e-05
Identities = 23/46 (50%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Frame = +2
Query: 497 EYRVLVTGLPPSGSWQDLKDHMREAGDVCFAXTFK--DGSGVVEFL 628
EYR++V L SWQDLKD+MR+AG+V +A K GV+EF+
Sbjct: 28 EYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFV 73
>U30883-1|AAA93073.1| 344|Homo sapiens SRp55-1 protein.
Length = 344
Score = 48.8 bits (111), Expect = 2e-05
Identities = 23/45 (51%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Frame = +2
Query: 497 EYRVLVTGLPPSGSWQDLKDHMREAGDVCFAXTFKD--GSGVVEF 625
EYR++V L SWQDLKD MR+AG+V +A K+ GV+EF
Sbjct: 109 EYRLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEF 153
>U30829-1|AAA93072.1| 335|Homo sapiens SRp55-3 protein.
Length = 335
Score = 48.8 bits (111), Expect = 2e-05
Identities = 23/45 (51%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Frame = +2
Query: 497 EYRVLVTGLPPSGSWQDLKDHMREAGDVCFAXTFKD--GSGVVEF 625
EYR++V L SWQDLKD MR+AG+V +A K+ GV+EF
Sbjct: 109 EYRLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEF 153
>BC006832-1|AAH06832.1| 344|Homo sapiens splicing factor,
arginine/serine-rich 6 protein.
Length = 344
Score = 48.8 bits (111), Expect = 2e-05
Identities = 23/45 (51%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Frame = +2
Query: 497 EYRVLVTGLPPSGSWQDLKDHMREAGDVCFAXTFKD--GSGVVEF 625
EYR++V L SWQDLKD MR+AG+V +A K+ GV+EF
Sbjct: 109 EYRLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEF 153
>AL031681-3|CAB43960.1| 344|Homo sapiens splicing factor,
arginine/serine-rich 6 protein.
Length = 344
Score = 48.8 bits (111), Expect = 2e-05
Identities = 23/45 (51%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Frame = +2
Query: 497 EYRVLVTGLPPSGSWQDLKDHMREAGDVCFAXTFKD--GSGVVEF 625
EYR++V L SWQDLKD MR+AG+V +A K+ GV+EF
Sbjct: 109 EYRLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEF 153
>AB208976-1|BAD92213.1| 279|Homo sapiens arginine/serine-rich
splicing factor 6 variant protein.
Length = 279
Score = 48.8 bits (111), Expect = 2e-05
Identities = 23/45 (51%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Frame = +2
Query: 497 EYRVLVTGLPPSGSWQDLKDHMREAGDVCFAXTFKD--GSGVVEF 625
EYR++V L SWQDLKD MR+AG+V +A K+ GV+EF
Sbjct: 143 EYRLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEF 187
>U30826-1|AAA93070.1| 272|Homo sapiens SRp40-1 protein.
Length = 272
Score = 44.4 bits (100), Expect = 3e-04
Identities = 24/45 (53%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Frame = +2
Query: 497 EYRVLVTGLPPSGSWQDLKDHMREAGDVCFAXTF--KDGSGVVEF 625
E R++V L SWQDLKD MR+AG+V FA K GVVEF
Sbjct: 107 ENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEF 151
>BT007089-1|AAP35752.1| 272|Homo sapiens splicing factor,
arginine/serine-rich 5 protein.
Length = 272
Score = 44.4 bits (100), Expect = 3e-04
Identities = 24/45 (53%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Frame = +2
Query: 497 EYRVLVTGLPPSGSWQDLKDHMREAGDVCFAXTF--KDGSGVVEF 625
E R++V L SWQDLKD MR+AG+V FA K GVVEF
Sbjct: 107 ENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEF 151
>BC040209-1|AAH40209.1| 272|Homo sapiens splicing factor,
arginine/serine-rich 5 protein.
Length = 272
Score = 44.4 bits (100), Expect = 3e-04
Identities = 24/45 (53%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Frame = +2
Query: 497 EYRVLVTGLPPSGSWQDLKDHMREAGDVCFAXTF--KDGSGVVEF 625
E R++V L SWQDLKD MR+AG+V FA K GVVEF
Sbjct: 107 ENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEF 151
>BC018823-1|AAH18823.1| 272|Homo sapiens splicing factor,
arginine/serine-rich 5 protein.
Length = 272
Score = 44.4 bits (100), Expect = 3e-04
Identities = 24/45 (53%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Frame = +2
Query: 497 EYRVLVTGLPPSGSWQDLKDHMREAGDVCFAXTF--KDGSGVVEF 625
E R++V L SWQDLKD MR+AG+V FA K GVVEF
Sbjct: 107 ENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEF 151
>AK023133-1|BAB14421.1| 576|Homo sapiens protein ( Homo sapiens
cDNA FLJ13071 fis, clone NT2RP3001792, moderately
similar to HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN M. ).
Length = 576
Score = 37.1 bits (82), Expect = 0.051
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 7/48 (14%)
Frame = +2
Query: 503 RVLVTGLPPSGSWQDLKDHMRE-AGDVCFAXTFKD------GSGVVEF 625
RV ++ +P WQ +KD MRE G+V + FKD G GVVEF
Sbjct: 101 RVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEF 148
>AF106685-1|AAD43038.1| 547|Homo sapiens myelin gene expression
factor 2 protein.
Length = 547
Score = 37.1 bits (82), Expect = 0.051
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 7/48 (14%)
Frame = +2
Query: 503 RVLVTGLPPSGSWQDLKDHMRE-AGDVCFAXTFKD------GSGVVEF 625
RV ++ +P WQ +KD MRE G+V + FKD G GVVEF
Sbjct: 48 RVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEF 95
>AB037762-1|BAA92579.1| 620|Homo sapiens KIAA1341 protein protein.
Length = 620
Score = 37.1 bits (82), Expect = 0.051
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 7/48 (14%)
Frame = +2
Query: 503 RVLVTGLPPSGSWQDLKDHMRE-AGDVCFAXTFKD------GSGVVEF 625
RV ++ +P WQ +KD MRE G+V + FKD G GVVEF
Sbjct: 121 RVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEF 168
>L32611-1|AAL31359.1| 691|Homo sapiens ribonucleoprotein protein.
Length = 691
Score = 32.3 bits (70), Expect = 1.5
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +2
Query: 500 YRVLVTGLPPSGSWQDLKDHMRE-AGDVCFAXTFKDGSG 613
YR +T +P WQ LKD ++E G+V + D G
Sbjct: 71 YRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEG 109
>L03532-1|AAA36192.1| 729|Homo sapiens M4 protein protein.
Length = 729
Score = 32.3 bits (70), Expect = 1.5
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +2
Query: 500 YRVLVTGLPPSGSWQDLKDHMRE-AGDVCFAXTFKDGSG 613
YR +T +P WQ LKD ++E G+V + D G
Sbjct: 70 YRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEG 108
>BC019580-1|AAH19580.1| 730|Homo sapiens heterogeneous nuclear
ribonucleoprotein M protein.
Length = 730
Score = 32.3 bits (70), Expect = 1.5
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +2
Query: 500 YRVLVTGLPPSGSWQDLKDHMRE-AGDVCFAXTFKDGSG 613
YR +T +P WQ LKD ++E G+V + D G
Sbjct: 71 YRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEG 109
>BC000138-1|AAH00138.2| 730|Homo sapiens heterogeneous nuclear
ribonucleoprotein M protein.
Length = 730
Score = 32.3 bits (70), Expect = 1.5
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +2
Query: 500 YRVLVTGLPPSGSWQDLKDHMRE-AGDVCFAXTFKDGSG 613
YR +T +P WQ LKD ++E G+V + D G
Sbjct: 71 YRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEG 109
>AF061832-1|AAC16002.1| 691|Homo sapiens M4 protein deletion mutant
protein.
Length = 691
Score = 32.3 bits (70), Expect = 1.5
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +2
Query: 500 YRVLVTGLPPSGSWQDLKDHMRE-AGDVCFAXTFKDGSG 613
YR +T +P WQ LKD ++E G+V + D G
Sbjct: 71 YRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEG 109
>CR457272-1|CAG33553.1| 357|Homo sapiens PSPC1 protein.
Length = 357
Score = 31.9 bits (69), Expect = 1.9
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +3
Query: 180 CRIYVGNLPPDIRTKDIQDLF 242
CR++VGNLP DI +D + LF
Sbjct: 46 CRLFVGNLPTDITEEDFKRLF 66
>BC014184-1|AAH14184.2| 393|Homo sapiens PSPC1 protein protein.
Length = 393
Score = 31.9 bits (69), Expect = 1.9
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +3
Query: 180 CRIYVGNLPPDIRTKDIQDLF 242
CR++VGNLP DI +D + LF
Sbjct: 82 CRLFVGNLPTDITEEDFKRLF 102
>AL354808-5|CAI41005.1| 248|Homo sapiens paraspeckle component 1
protein.
Length = 248
Score = 31.9 bits (69), Expect = 1.9
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +3
Query: 180 CRIYVGNLPPDIRTKDIQDLF 242
CR++VGNLP DI +D + LF
Sbjct: 82 CRLFVGNLPTDITEEDFKRLF 102
>AL354808-4|CAI41004.1| 523|Homo sapiens paraspeckle component 1
protein.
Length = 523
Score = 31.9 bits (69), Expect = 1.9
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +3
Query: 180 CRIYVGNLPPDIRTKDIQDLF 242
CR++VGNLP DI +D + LF
Sbjct: 82 CRLFVGNLPTDITEEDFKRLF 102
>AK001817-1|BAA91924.1| 357|Homo sapiens protein ( Homo sapiens
cDNA FLJ10955 fis, clone PLACE1000406, moderately
similar to PTB-ASSOCIATED SPLICING FACTOR. ).
Length = 357
Score = 31.9 bits (69), Expect = 1.9
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +3
Query: 180 CRIYVGNLPPDIRTKDIQDLF 242
CR++VGNLP DI +D + LF
Sbjct: 46 CRLFVGNLPTDITEEDFKRLF 66
>AF449627-1|AAL59602.1| 393|Homo sapiens paraspeckle protein 1 beta
isoform protein.
Length = 393
Score = 31.9 bits (69), Expect = 1.9
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +3
Query: 180 CRIYVGNLPPDIRTKDIQDLF 242
CR++VGNLP DI +D + LF
Sbjct: 82 CRLFVGNLPTDITEEDFKRLF 102
>AF448795-1|AAL59601.1| 523|Homo sapiens paraspeckle protein 1
alpha isoform protein.
Length = 523
Score = 31.9 bits (69), Expect = 1.9
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +3
Query: 180 CRIYVGNLPPDIRTKDIQDLF 242
CR++VGNLP DI +D + LF
Sbjct: 82 CRLFVGNLPTDITEEDFKRLF 102
>AB209804-1|BAD93041.1| 326|Homo sapiens CS0DF038YO05 variant
protein.
Length = 326
Score = 31.9 bits (69), Expect = 1.9
Identities = 17/30 (56%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Frame = +2
Query: 542 QDLKDHMREAGDVCFAXTF--KDGSGVVEF 625
+DLKD MR+AG+V FA K GVVEF
Sbjct: 176 KDLKDFMRQAGEVTFADAHRPKLNEGVVEF 205
>Y11289-1|CAA72157.1| 471|Homo sapiens p54nrb protein.
Length = 471
Score = 31.1 bits (67), Expect = 3.4
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +3
Query: 183 RIYVGNLPPDIRTKDIQDLFYNVRKS 260
R++VGNLPPDI ++++ LF K+
Sbjct: 75 RLFVGNLPPDITEEEMRKLFEKYGKA 100
>U89867-1|AAC51852.1| 471|Homo sapiens nuclear matrix protein 55
protein.
Length = 471
Score = 31.1 bits (67), Expect = 3.4
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +3
Query: 183 RIYVGNLPPDIRTKDIQDLFYNVRKS 260
R++VGNLPPDI ++++ LF K+
Sbjct: 75 RLFVGNLPPDITEEEMRKLFEKYGKA 100
>U02493-1|AAA03427.1| 471|Homo sapiens 54 kDa protein protein.
Length = 471
Score = 31.1 bits (67), Expect = 3.4
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +3
Query: 183 RIYVGNLPPDIRTKDIQDLFYNVRKS 260
R++VGNLPPDI ++++ LF K+
Sbjct: 75 RLFVGNLPPDITEEEMRKLFEKYGKA 100
>L14599-1|AAC37578.1| 471|Homo sapiens protein ( Human mRNA,
complete cds. ).
Length = 471
Score = 31.1 bits (67), Expect = 3.4
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +3
Query: 183 RIYVGNLPPDIRTKDIQDLFYNVRKS 260
R++VGNLPPDI ++++ LF K+
Sbjct: 75 RLFVGNLPPDITEEEMRKLFEKYGKA 100
>CR456761-1|CAG33042.1| 471|Homo sapiens NONO protein.
Length = 471
Score = 31.1 bits (67), Expect = 3.4
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +3
Query: 183 RIYVGNLPPDIRTKDIQDLFYNVRKS 260
R++VGNLPPDI ++++ LF K+
Sbjct: 75 RLFVGNLPPDITEEEMRKLFEKYGKA 100
>BC069639-1|AAH69639.1| 471|Homo sapiens non-POU domain containing,
octamer-binding protein.
Length = 471
Score = 31.1 bits (67), Expect = 3.4
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +3
Query: 183 RIYVGNLPPDIRTKDIQDLFYNVRKS 260
R++VGNLPPDI ++++ LF K+
Sbjct: 75 RLFVGNLPPDITEEEMRKLFEKYGKA 100
>BC069616-1|AAH69616.1| 471|Homo sapiens non-POU domain containing,
octamer-binding protein.
Length = 471
Score = 31.1 bits (67), Expect = 3.4
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +3
Query: 183 RIYVGNLPPDIRTKDIQDLFYNVRKS 260
R++VGNLPPDI ++++ LF K+
Sbjct: 75 RLFVGNLPPDITEEEMRKLFEKYGKA 100
>BC028299-1|AAH28299.1| 471|Homo sapiens non-POU domain containing,
octamer-binding protein.
Length = 471
Score = 31.1 bits (67), Expect = 3.4
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +3
Query: 183 RIYVGNLPPDIRTKDIQDLFYNVRKS 260
R++VGNLPPDI ++++ LF K+
Sbjct: 75 RLFVGNLPPDITEEEMRKLFEKYGKA 100
>BC012141-1|AAH12141.1| 471|Homo sapiens NONO protein protein.
Length = 471
Score = 31.1 bits (67), Expect = 3.4
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +3
Query: 183 RIYVGNLPPDIRTKDIQDLFYNVRKS 260
R++VGNLPPDI ++++ LF K+
Sbjct: 75 RLFVGNLPPDITEEEMRKLFEKYGKA 100
>BC003129-1|AAH03129.1| 471|Homo sapiens NONO protein protein.
Length = 471
Score = 31.1 bits (67), Expect = 3.4
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +3
Query: 183 RIYVGNLPPDIRTKDIQDLFYNVRKS 260
R++VGNLPPDI ++++ LF K+
Sbjct: 75 RLFVGNLPPDITEEEMRKLFEKYGKA 100
>BC002364-1|AAH02364.1| 471|Homo sapiens non-POU domain containing,
octamer-binding protein.
Length = 471
Score = 31.1 bits (67), Expect = 3.4
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +3
Query: 183 RIYVGNLPPDIRTKDIQDLFYNVRKS 260
R++VGNLPPDI ++++ LF K+
Sbjct: 75 RLFVGNLPPDITEEEMRKLFEKYGKA 100
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,425,660
Number of Sequences: 237096
Number of extensions: 1198661
Number of successful extensions: 2703
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 2539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2696
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6860268620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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