Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_N07
         (463 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP31B10.08c |rpl35a|rpl33|60S ribosomal protein L35a|Schizosac...    49   4e-07
SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein L37|S...    47   1e-06
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo...    25   5.6  

>SPCP31B10.08c |rpl35a|rpl33|60S ribosomal protein
           L35a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 108

 Score = 48.8 bits (111), Expect = 4e-07
 Identities = 19/30 (63%), Positives = 24/30 (80%)
 Frame = +3

Query: 372 TKLRAIWGXVTRPHGNSGSVRAKXKSNLPA 461
           +K+R IWG + RPHGNSG+VRA+   NLPA
Sbjct: 63  SKIRVIWGTIARPHGNSGAVRARFVHNLPA 92



 Score = 30.7 bits (66), Expect = 0.11
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 254 RIEGAKXRNDAFFYAGKHCVYVYRAXK 334
           +IEG   + +A FY GK   YVY++ K
Sbjct: 32  KIEGCDSKEEAQFYLGKRVCYVYKSSK 58


>SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 108

 Score = 47.2 bits (107), Expect = 1e-06
 Identities = 19/29 (65%), Positives = 23/29 (79%)
 Frame = +3

Query: 372 TKLRAIWGXVTRPHGNSGSVRAKXKSNLP 458
           +K+R IWG V+RPHGNSG VRA+   NLP
Sbjct: 63  SKIRVIWGTVSRPHGNSGVVRARFTHNLP 91



 Score = 29.5 bits (63), Expect = 0.26
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 254 RIEGAKXRNDAFFYAGKHCVYVYRAXKRTPIPG 352
           +IEG   + +A FY GK   +VY++ K  P+ G
Sbjct: 32  KIEGCDSKEEAQFYLGKRICFVYKSNK--PVRG 62


>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
           Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 568

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 217 PRLYPLNTAFAYSLPWRGFXALRR 146
           PR++  NT F  SL  RG+  +RR
Sbjct: 416 PRVHGFNTFFYTSLQRRGYAGVRR 439


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,598,536
Number of Sequences: 5004
Number of extensions: 27164
Number of successful extensions: 64
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)