Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_N07
(463 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0995 + 33377933-33378000,33378099-33378327,33378410-33378451 61 4e-10
05_07_0069 + 27475072-27475136,27475237-27475465,27475532-274756... 58 3e-09
05_07_0061 + 27420442-27420506,27420619-27420847,27420968-27421009 58 3e-09
08_01_0820 - 7957563-7957646,7958036-7958134,7958233-7959729 29 2.4
09_04_0185 - 15396119-15396317,15396781-15396821,15396932-153970... 28 4.2
03_05_1127 + 30587488-30588291 28 4.2
05_03_0117 + 8580270-8580677,8581541-8582328,8582412-8582663,858... 27 7.3
08_02_1426 + 27009720-27010787,27011846-27012517,27012999-270137... 27 9.7
01_05_0623 - 23768426-23768794 27 9.7
>02_05_0995 + 33377933-33378000,33378099-33378327,33378410-33378451
Length = 112
Score = 61.3 bits (142), Expect = 4e-10
Identities = 39/94 (41%), Positives = 47/94 (50%)
Frame = +3
Query: 177 RLYAKAVFRGYKRGLRNQHENTXSPQGLKEQXTVMMHSFMLASIASMCTELXRGHQFPEV 356
RLY + GYKR NQ+ENT Q ++ T +A C + + +
Sbjct: 11 RLYVRGTILGYKRSKSNQYENTSLVQ-IEGVNTK-------EEVAWYCGK-RMAYVYKAK 61
Query: 357 PVGKKTKLRAIWGXVTRPHGNSGSVRAKXKSNLP 458
T R IWG VTRPHGNSG VRAK KSNLP
Sbjct: 62 TKSGGTNYRCIWGKVTRPHGNSGVVRAKFKSNLP 95
Score = 28.3 bits (60), Expect = 3.2
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +2
Query: 254 RIEGAKXRNDAFFYAGKHCVYVYRAXKRT 340
+IEG + + +Y GK YVY+A ++
Sbjct: 36 QIEGVNTKEEVAWYCGKRMAYVYKAKTKS 64
>05_07_0069 +
27475072-27475136,27475237-27475465,27475532-27475630,
27476172-27476287,27476670-27476757
Length = 198
Score = 58.0 bits (134), Expect = 3e-09
Identities = 37/104 (35%), Positives = 51/104 (49%), Gaps = 2/104 (1%)
Frame = +3
Query: 153 KAXKPRHGRLYAKAVFRGYKRGLRNQHENTXSPQ--GLKEQXTVMMHSFMLASIASMCTE 326
K + + RLY + GYKR NQ+ENT Q G+ + V ++ +
Sbjct: 2 KGRQGQRVRLYVRGTILGYKRSKSNQYENTSLLQIEGVNTKEEVGWYAGKRIA------- 54
Query: 327 LXRGHQFPEVPVGKKTKLRAIWGXVTRPHGNSGSVRAKXKSNLP 458
+ + + +R IWG VTRPHGNSG VRAK +SNLP
Sbjct: 55 ----YVYKAKTKSNDSTIRCIWGKVTRPHGNSGVVRAKFRSNLP 94
Score = 29.5 bits (63), Expect = 1.4
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 254 RIEGAKXRNDAFFYAGKHCVYVYRAXKRT 340
+IEG + + +YAGK YVY+A ++
Sbjct: 35 QIEGVNTKEEVGWYAGKRIAYVYKAKTKS 63
>05_07_0061 + 27420442-27420506,27420619-27420847,27420968-27421009
Length = 111
Score = 58.0 bits (134), Expect = 3e-09
Identities = 37/104 (35%), Positives = 51/104 (49%), Gaps = 2/104 (1%)
Frame = +3
Query: 153 KAXKPRHGRLYAKAVFRGYKRGLRNQHENTXSPQ--GLKEQXTVMMHSFMLASIASMCTE 326
K + + RLY + GYKR NQ+ENT Q G+ + V ++ +
Sbjct: 2 KGRQGQRVRLYVRGTILGYKRSKSNQYENTSLLQIEGVNTKEEVGWYAGKRIA------- 54
Query: 327 LXRGHQFPEVPVGKKTKLRAIWGXVTRPHGNSGSVRAKXKSNLP 458
+ + + +R IWG VTRPHGNSG VRAK +SNLP
Sbjct: 55 ----YVYKAKTKSNDSTIRCIWGKVTRPHGNSGVVRAKFRSNLP 94
Score = 29.5 bits (63), Expect = 1.4
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 254 RIEGAKXRNDAFFYAGKHCVYVYRAXKRT 340
+IEG + + +YAGK YVY+A ++
Sbjct: 35 QIEGVNTKEEVGWYAGKRIAYVYKAKTKS 63
>08_01_0820 - 7957563-7957646,7958036-7958134,7958233-7959729
Length = 559
Score = 28.7 bits (61), Expect = 2.4
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -2
Query: 216 HAYIL*IRPLRTACRGGAXMLCE-GPLWAPQELLE 115
H++ +RP+R C G L E G L +PQEL++
Sbjct: 513 HSFHATVRPIRIQCSEGVEKLYELGVLQSPQELVQ 547
>09_04_0185 -
15396119-15396317,15396781-15396821,15396932-15397090,
15397320-15397517
Length = 198
Score = 27.9 bits (59), Expect = 4.2
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = +1
Query: 124 LLWSPQRSFAKHXSPATAGCTQRPYSEDISVVYATSTRTPXLLKD 258
+LW + PATA +P ++ V T+ P LL D
Sbjct: 147 VLWGKADDMKRGSEPATAAAAAKPCTDSCRDVERTAAEEPLLLAD 191
>03_05_1127 + 30587488-30588291
Length = 267
Score = 27.9 bits (59), Expect = 4.2
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -1
Query: 463 WAGRLDLXLARTLPELPCGRVTLPQIARSLVFLPTGTSGNW 341
+ G+ + +AR + E P GR+ +P LV +G W
Sbjct: 214 YTGKTEEDMARYIAEAPLGRLGMPDDIAPLVGFLASDAGGW 254
>05_03_0117 +
8580270-8580677,8581541-8582328,8582412-8582663,
8582744-8582854,8582942-8583020,8583104-8583175,
8583253-8583420
Length = 625
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 400 TLPQIARSLVFLPTGTSGNWCPLXSSVHIDAML 302
T P++A S PT T+G W PL + V + L
Sbjct: 23 TEPKLAPSRAPPPTPTTGGWNPLAALVEVPGAL 55
>08_02_1426 + 27009720-27010787,27011846-27012517,27012999-27013793,
27014914-27014943,27018095-27019987
Length = 1485
Score = 26.6 bits (56), Expect = 9.7
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +3
Query: 168 RHGRLYAKAVFRGYKRGLRNQHENTXSPQGLKEQXTVMMHSFMLASIASMCT 323
R+GRL + + GY R RN + + + +EQ T +++ M+ ++ T
Sbjct: 966 RYGRLLRRWIAEGYSRAKRNNN----AEKEAEEQFTALLNKSMIQQSRTVTT 1013
>01_05_0623 - 23768426-23768794
Length = 122
Score = 26.6 bits (56), Expect = 9.7
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +2
Query: 350 GGPRWQKNQAACYLGQXDPPTWQ 418
GGPR ++ + Y+G P W+
Sbjct: 80 GGPRRRRKEEVAYVGNMTSPAWE 102
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,550,954
Number of Sequences: 37544
Number of extensions: 216959
Number of successful extensions: 483
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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