Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_N07
(463 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC061890-1|AAH61890.1| 110|Homo sapiens ribosomal protein L35a ... 84 3e-16
BC017093-1|AAH17093.1| 110|Homo sapiens RPL35A protein protein. 84 3e-16
BC010949-1|AAH10949.1| 110|Homo sapiens ribosomal protein L35a ... 84 3e-16
BC001037-1|AAH01037.1| 110|Homo sapiens ribosomal protein L35a ... 84 3e-16
AY871273-1|AAX11429.1| 110|Homo sapiens cell growth-inhibiting ... 84 3e-16
X52966-1|CAA37138.1| 110|Homo sapiens protein ( Human mRNA for ... 81 2e-15
AL365223-3|CAI15713.1| 96|Homo sapiens ribosomal protein L35a ... 66 4e-11
X94619-1|CAA64325.1| 21|Homo sapiens ribosomal protein L35a pr... 38 0.017
BC125127-1|AAI25128.1| 629|Homo sapiens PRPF39 protein protein. 29 7.8
BC125126-1|AAI25127.1| 629|Homo sapiens PRPF39 protein protein. 29 7.8
BC051886-1|AAH51886.1| 479|Homo sapiens PRPF39 protein protein. 29 7.8
BC020655-1|AAH20655.1| 218|Homo sapiens Unknown (protein for IM... 29 7.8
AK001990-1|BAA92024.1| 272|Homo sapiens protein ( Homo sapiens ... 29 7.8
>BC061890-1|AAH61890.1| 110|Homo sapiens ribosomal protein L35a
protein.
Length = 110
Score = 83.8 bits (198), Expect = 3e-16
Identities = 45/96 (46%), Positives = 54/96 (56%)
Frame = +3
Query: 174 GRLYAKAVFRGYKRGLRNQHENTXSPQGLKEQXTVMMHSFMLASIASMCTELXRGHQFPE 353
GRL++KA+F GYKRGLRNQ E+T L + V + C + +
Sbjct: 3 GRLWSKAIFAGYKRGLRNQREHTA----LLKIEGVYARDETEFYLGKRCAYVYKAKNNTV 58
Query: 354 VPVGKKTKLRAIWGXVTRPHGNSGSVRAKXKSNLPA 461
P GK K R IWG VTR HGNSG VRAK +SNLPA
Sbjct: 59 TPGGKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPA 94
>BC017093-1|AAH17093.1| 110|Homo sapiens RPL35A protein protein.
Length = 110
Score = 83.8 bits (198), Expect = 3e-16
Identities = 45/96 (46%), Positives = 54/96 (56%)
Frame = +3
Query: 174 GRLYAKAVFRGYKRGLRNQHENTXSPQGLKEQXTVMMHSFMLASIASMCTELXRGHQFPE 353
GRL++KA+F GYKRGLRNQ E+T L + V + C + +
Sbjct: 3 GRLWSKAIFAGYKRGLRNQREHTA----LLKIEGVYARDETEFYLGKRCAYVYKAKNNTV 58
Query: 354 VPVGKKTKLRAIWGXVTRPHGNSGSVRAKXKSNLPA 461
P GK K R IWG VTR HGNSG VRAK +SNLPA
Sbjct: 59 TPGGKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPA 94
>BC010949-1|AAH10949.1| 110|Homo sapiens ribosomal protein L35a
protein.
Length = 110
Score = 83.8 bits (198), Expect = 3e-16
Identities = 45/96 (46%), Positives = 54/96 (56%)
Frame = +3
Query: 174 GRLYAKAVFRGYKRGLRNQHENTXSPQGLKEQXTVMMHSFMLASIASMCTELXRGHQFPE 353
GRL++KA+F GYKRGLRNQ E+T L + V + C + +
Sbjct: 3 GRLWSKAIFAGYKRGLRNQREHTA----LLKIEGVYARDETEFYLGKRCAYVYKAKNNTV 58
Query: 354 VPVGKKTKLRAIWGXVTRPHGNSGSVRAKXKSNLPA 461
P GK K R IWG VTR HGNSG VRAK +SNLPA
Sbjct: 59 TPGGKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPA 94
>BC001037-1|AAH01037.1| 110|Homo sapiens ribosomal protein L35a
protein.
Length = 110
Score = 83.8 bits (198), Expect = 3e-16
Identities = 45/96 (46%), Positives = 54/96 (56%)
Frame = +3
Query: 174 GRLYAKAVFRGYKRGLRNQHENTXSPQGLKEQXTVMMHSFMLASIASMCTELXRGHQFPE 353
GRL++KA+F GYKRGLRNQ E+T L + V + C + +
Sbjct: 3 GRLWSKAIFAGYKRGLRNQREHTA----LLKIEGVYARDETEFYLGKRCAYVYKAKNNTV 58
Query: 354 VPVGKKTKLRAIWGXVTRPHGNSGSVRAKXKSNLPA 461
P GK K R IWG VTR HGNSG VRAK +SNLPA
Sbjct: 59 TPGGKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPA 94
>AY871273-1|AAX11429.1| 110|Homo sapiens cell growth-inhibiting
protein 33 protein.
Length = 110
Score = 83.8 bits (198), Expect = 3e-16
Identities = 45/96 (46%), Positives = 54/96 (56%)
Frame = +3
Query: 174 GRLYAKAVFRGYKRGLRNQHENTXSPQGLKEQXTVMMHSFMLASIASMCTELXRGHQFPE 353
GRL++KA+F GYKRGLRNQ E+T L + V + C + +
Sbjct: 3 GRLWSKAIFAGYKRGLRNQREHTA----LLKIEGVYARDETEFYLGKRCAYVYKAKNNTV 58
Query: 354 VPVGKKTKLRAIWGXVTRPHGNSGSVRAKXKSNLPA 461
P GK K R IWG VTR HGNSG VRAK +SNLPA
Sbjct: 59 TPGGKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPA 94
>X52966-1|CAA37138.1| 110|Homo sapiens protein ( Human mRNA for
ribosomal protein L35a. ).
Length = 110
Score = 81.0 bits (191), Expect = 2e-15
Identities = 44/96 (45%), Positives = 53/96 (55%)
Frame = +3
Query: 174 GRLYAKAVFRGYKRGLRNQHENTXSPQGLKEQXTVMMHSFMLASIASMCTELXRGHQFPE 353
GRL++KA+F GYKRGLRNQ E+T L + V + C + +
Sbjct: 3 GRLWSKAIFAGYKRGLRNQREHTA----LLKIEGVYARDETEFYLGKRCAYVYKAKNNTV 58
Query: 354 VPVGKKTKLRAIWGXVTRPHGNSGSVRAKXKSNLPA 461
P GK K R IWG VTR HGNSG V AK +SNLPA
Sbjct: 59 TPGGKPNKTRVIWGKVTRAHGNSGMVLAKFRSNLPA 94
>AL365223-3|CAI15713.1| 96|Homo sapiens ribosomal protein L35a
pseudogene 3 protein.
Length = 96
Score = 66.5 bits (155), Expect = 4e-11
Identities = 39/96 (40%), Positives = 49/96 (51%)
Frame = +3
Query: 174 GRLYAKAVFRGYKRGLRNQHENTXSPQGLKEQXTVMMHSFMLASIASMCTELXRGHQFPE 353
GRL++K+ F GYKR L+NQ E+T LK + + C + +
Sbjct: 2 GRLWSKSFFAGYKRSLQNQREHTAL---LKIEGGYAQDETEFY-LGKRCACVYKAKSNTM 57
Query: 354 VPVGKKTKLRAIWGXVTRPHGNSGSVRAKXKSNLPA 461
+P K K R IWG VTR H NSG V AK SNLPA
Sbjct: 58 IPGSKPNKSRVIWGKVTRAHRNSGMVAAKFHSNLPA 93
>X94619-1|CAA64325.1| 21|Homo sapiens ribosomal protein L35a
protein.
Length = 21
Score = 37.9 bits (84), Expect = 0.017
Identities = 15/19 (78%), Positives = 18/19 (94%)
Frame = +3
Query: 174 GRLYAKAVFRGYKRGLRNQ 230
GRL++KA+F GYKRGLRNQ
Sbjct: 3 GRLWSKAIFAGYKRGLRNQ 21
>BC125127-1|AAI25128.1| 629|Homo sapiens PRPF39 protein protein.
Length = 629
Score = 29.1 bits (62), Expect = 7.8
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 236 EHRVSSRIEGAKXRNDAFFYAGKHCVYVYRAXKRTP 343
EH + I+ AK N++ FYA K ++++ K P
Sbjct: 435 EHLLQDAIKNAKSNNESSFYAVKLARHLFKIQKNLP 470
>BC125126-1|AAI25127.1| 629|Homo sapiens PRPF39 protein protein.
Length = 629
Score = 29.1 bits (62), Expect = 7.8
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 236 EHRVSSRIEGAKXRNDAFFYAGKHCVYVYRAXKRTP 343
EH + I+ AK N++ FYA K ++++ K P
Sbjct: 435 EHLLQDAIKNAKSNNESSFYAVKLARHLFKIQKNLP 470
>BC051886-1|AAH51886.1| 479|Homo sapiens PRPF39 protein protein.
Length = 479
Score = 29.1 bits (62), Expect = 7.8
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 236 EHRVSSRIEGAKXRNDAFFYAGKHCVYVYRAXKRTP 343
EH + I+ AK N++ FYA K ++++ K P
Sbjct: 285 EHLLQDAIKNAKSNNESSFYAVKLARHLFKIQKNLP 320
>BC020655-1|AAH20655.1| 218|Homo sapiens Unknown (protein for
IMAGE:4709634) protein.
Length = 218
Score = 29.1 bits (62), Expect = 7.8
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 236 EHRVSSRIEGAKXRNDAFFYAGKHCVYVYRAXKRTP 343
EH + I+ AK N++ FYA K ++++ K P
Sbjct: 79 EHLLQDAIKNAKSNNESSFYAVKLARHLFKIQKNLP 114
>AK001990-1|BAA92024.1| 272|Homo sapiens protein ( Homo sapiens
cDNA FLJ11128 fis, clone PLACE1006236. ).
Length = 272
Score = 29.1 bits (62), Expect = 7.8
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 236 EHRVSSRIEGAKXRNDAFFYAGKHCVYVYRAXKRTP 343
EH + I+ AK N++ FYA K ++++ K P
Sbjct: 79 EHLLQDAIKNAKSNNESSFYAVKLARHLFKIQKNLP 114
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,177,988
Number of Sequences: 237096
Number of extensions: 1286290
Number of successful extensions: 6165
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 6086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6151
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3929066862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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