Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_N07
         (463 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41264-2|AAA82422.1|  124|Caenorhabditis elegans Ribosomal prote...    73   1e-13
AL009246-1|CAA15835.1|  281|Caenorhabditis elegans Hypothetical ...    29   1.6  

>U41264-2|AAA82422.1|  124|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 33 protein.
          Length = 124

 Score = 72.5 bits (170), Expect = 1e-13
 Identities = 44/109 (40%), Positives = 58/109 (53%), Gaps = 4/109 (3%)
 Frame = +3

Query: 144 VLRKAXKPRHGRLYAKAVFRGYKRGLRNQHENTX--SPQGL--KEQXTVMMHSFMLASIA 311
           V R+   P  GRLY KA+F G+KRGLR Q E+T     +G+  KE         ++    
Sbjct: 6   VARRPSAPTTGRLYVKAIFTGFKRGLRTQSEHTSLLKLEGVFNKEDAGFYAGKRVVYLYK 65

Query: 312 SMCTELXRGHQFPEVPVGKKTKLRAIWGXVTRPHGNSGSVRAKXKSNLP 458
           +    L  GH          T+ RAIWG +TRPHGN+G+VRAK   N+P
Sbjct: 66  AHNKTLKTGHTVA-------TRTRAIWGKITRPHGNAGAVRAKFHHNIP 107


>AL009246-1|CAA15835.1|  281|Caenorhabditis elegans Hypothetical
           protein C47F8.1 protein.
          Length = 281

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 19/77 (24%), Positives = 36/77 (46%)
 Frame = +3

Query: 147 LRKAXKPRHGRLYAKAVFRGYKRGLRNQHENTXSPQGLKEQXTVMMHSFMLASIASMCTE 326
           L+   + +H +++ K  F  +K  +R ++ N  S   L +    +MH+F + ++   CT 
Sbjct: 51  LKIVAEEKHYKIWLKEDFSKHKARIRAENSNGTS---LFKNIRWLMHTFWVETVYLDCTN 107

Query: 327 LXRGHQFPEVPVGKKTK 377
           +  G     V   KK K
Sbjct: 108 VEEGDVVKVVEYLKKEK 124


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,149,915
Number of Sequences: 27780
Number of extensions: 165791
Number of successful extensions: 339
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 337
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)