Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_N05
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 98 8e-22
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 98 8e-22
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo... 29 0.77
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 28 1.0
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha... 28 1.4
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch... 28 1.4
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar... 28 1.4
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar... 28 1.4
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1... 28 1.4
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha... 28 1.4
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual 27 3.1
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 26 4.1
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 26 4.1
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 5.5
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid... 26 5.5
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 25 7.2
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc... 25 7.2
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 7.2
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch... 25 9.5
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 98.3 bits (234), Expect = 8e-22
Identities = 47/70 (67%), Positives = 53/70 (75%)
Frame = +3
Query: 111 AVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLAKELRKGS 290
AVPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ++SEALEA RIC NKYL K K S
Sbjct: 25 AVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALEAARICANKYLVKIGGKDS 84
Query: 291 VPYPHETSPF 320
PF
Sbjct: 85 FHLRVRAHPF 94
Score = 91.9 bits (218), Expect = 7e-20
Identities = 41/79 (51%), Positives = 55/79 (69%)
Frame = +2
Query: 416 VXRVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFDKLR 595
V RV IGQ +MSVR+ D +A IEALRR ++KFPG+Q+I VSKKWGF++Y RDE+ + R
Sbjct: 126 VARVNIGQVLMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKR 185
Query: 596 EEGRLANDGCIVXYRPEHG 652
G + DGC + + G
Sbjct: 186 SRGEIIPDGCYAKFLNKRG 204
Score = 87.8 bits (208), Expect = 1e-18
Identities = 37/44 (84%), Positives = 40/44 (90%)
Frame = +1
Query: 280 GKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQG 411
GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G
Sbjct: 81 GKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNG 124
Score = 54.0 bits (124), Expect = 2e-08
Identities = 21/24 (87%), Positives = 22/24 (91%)
Frame = +2
Query: 38 MGRRPARCYRYCKNKPYPKSRFCR 109
M RRPARCYRYCKNKPYPKSR+ R
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNR 24
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 98.3 bits (234), Expect = 8e-22
Identities = 47/70 (67%), Positives = 53/70 (75%)
Frame = +3
Query: 111 AVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLAKELRKGS 290
AVPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ++SEALEA RIC NKYL K K S
Sbjct: 25 AVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALEAARICANKYLVKIGGKDS 84
Query: 291 VPYPHETSPF 320
PF
Sbjct: 85 FHLRVRAHPF 94
Score = 91.5 bits (217), Expect = 1e-19
Identities = 41/79 (51%), Positives = 55/79 (69%)
Frame = +2
Query: 416 VXRVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFDKLR 595
V RV IGQ +MSVR+ D +A IEALRR ++KFPG+Q+I VSKKWGF++Y RDE+ + R
Sbjct: 126 VARVNIGQILMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKR 185
Query: 596 EEGRLANDGCIVXYRPEHG 652
G + DGC + + G
Sbjct: 186 SRGEIIPDGCYAKFLNKRG 204
Score = 87.8 bits (208), Expect = 1e-18
Identities = 37/44 (84%), Positives = 40/44 (90%)
Frame = +1
Query: 280 GKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQG 411
GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G
Sbjct: 81 GKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNG 124
Score = 54.0 bits (124), Expect = 2e-08
Identities = 21/24 (87%), Positives = 22/24 (91%)
Frame = +2
Query: 38 MGRRPARCYRYCKNKPYPKSRFCR 109
M RRPARCYRYCKNKPYPKSR+ R
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNR 24
>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
es pombe|chr 2|||Manual
Length = 372
Score = 28.7 bits (61), Expect = 0.77
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +3
Query: 453 CALVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSLTSCVKRAAS 611
C L+T C + + SP+++RS Y +G++ S + +T RAA+
Sbjct: 17 CLLITLSIILLGWQCVLLYNHSPEIQRSVYTLTGLAPSSKMAFVTMLTVRAAN 69
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 28.3 bits (60), Expect = 1.0
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 99 GSVGAVPDPKIRIFDLGKKRATVDDFPLCV-HLVSDEYEQLSSEALEA 239
G++ + DPK+R+F KRAT + C LV+ + + S +++A
Sbjct: 313 GALISPKDPKLRVFPFTTKRATHSELLRCYKELVTPKISHVDSISIKA 360
>SPBC1348.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = -3
Query: 613 SEAALFTQLVKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 479
S+A F +++ FI C +P+L Y+ + G + + + DL
Sbjct: 263 SKARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 307
>SPBPB2B2.19c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = -3
Query: 613 SEAALFTQLVKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 479
S+A F +++ FI C +P+L Y+ + G + + + DL
Sbjct: 263 SKARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 307
>SPAC977.01 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1||Partial|Manual
Length = 316
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = -3
Query: 613 SEAALFTQLVKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 479
S+A F +++ FI C +P+L Y+ + G + + + DL
Sbjct: 235 SKARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 279
>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 205
Score = 27.9 bits (59), Expect = 1.4
Identities = 17/37 (45%), Positives = 23/37 (62%)
Frame = +3
Query: 192 LVSDEYEQLSSEALEAGRICCNKYLAKELRKGSVPYP 302
LVSDE + + A + G + C+ AKELRK +VP P
Sbjct: 154 LVSDEKKSIF--AAKCGHLFCST-CAKELRKKTVPCP 187
>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1004
Score = 27.9 bits (59), Expect = 1.4
Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Frame = -1
Query: 219 SAVHIRRTP---SARTVESRQRSLSSYPNRRYGSWDQVQPRQNLDFGYGLFLQYR*HLAG 49
S VH TP SAR ES ++ L+ P+ S P + G F Q HLA
Sbjct: 898 SKVHTLETPKVISARPAESVKQPLTPVPSMTSQSAQSYIPPRRQQQQKGFFAQINDHLAQ 957
Query: 48 RRPMV 34
R M+
Sbjct: 958 RGNML 962
>SPAC750.05c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = -3
Query: 613 SEAALFTQLVKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 479
S+A F +++ FI C +P+L Y+ + G + + + DL
Sbjct: 263 SKARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 307
>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +3
Query: 126 KIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAG 242
KI + +KRA +D LC+ +S + E ++ +LE+G
Sbjct: 56 KISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLESG 94
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 4.1
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 154 RERPLTTFHCACTWCPTNMNS 216
R RP +T H +CT+C + S
Sbjct: 459 RSRPDSTSHASCTYCVARLRS 479
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Frame = +1
Query: 94 IEVLSGLYLIPRSVSSIWVR---RERPLTTFHCA 186
I VL+ + L+P SV++ WV+ +E P FH +
Sbjct: 251 ILVLNKVDLVPTSVAAAWVKILAKEYPTIAFHAS 284
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.8 bits (54), Expect = 5.5
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Frame = +3
Query: 141 DLGKKRATVDDFPLCVHLVSDEYEQL---SSEALEAGRICCN--KYLAKELRK 284
++ KKRA DD + +VS EYE L SS+ ++ N KY+ K ++K
Sbjct: 1033 EIEKKRAENDDLQSKLSVVSSEYENLLLISSQTNKSLEDKTNQLKYIEKNVQK 1085
>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
peptidyl-prolyl cis-trans isomerase
Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 610
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +3
Query: 51 QRDATGTAKINRIRNRGSVGAVPDPKIRIFDLGKKRATVD 170
Q+ + +++ N S + PD K+R+FD RA ++
Sbjct: 235 QKSVPTSLEVSHFENFWSTISYPDCKVRVFDTKSGRAILE 274
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -2
Query: 239 CLQSL*AQLFIFVGHQVHAQWKVVNGRSLLTQIEDTDLG 123
CL L L + H++ ++W+ +N R LL + + + G
Sbjct: 940 CLLPLLPALLSELDHKLVSEWRRINDRGLLVEEDAEETG 978
>SPAC25A8.01c ||snf2SR|fun thirty related protein
Fft3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 922
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 483 SSRLCAVPSSSSPDVKRSTYQRSGVS 560
SS + P+S SPD+K YQ G++
Sbjct: 371 SSFITTPPASFSPDIKLQDYQIIGIN 396
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.4 bits (53), Expect = 7.2
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 283 KDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMR 387
+D H+RM ++ FH IN MLS + D + MR
Sbjct: 859 EDNSHLRMSINSFH---INDMLSKSSRDNNRQLMR 890
>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 474
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = -3
Query: 289 DPFRSSLARYLLQQIR 242
DPFR+ +RY+LQ+I+
Sbjct: 361 DPFRAVQSRYILQEIQ 376
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,884,151
Number of Sequences: 5004
Number of extensions: 61494
Number of successful extensions: 221
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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