Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_N05
(654 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z48334-1|CAA88308.1| 214|Caenorhabditis elegans Hypothetical pr... 97 7e-21
AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical ... 32 0.31
Z46791-1|CAA86761.1| 476|Caenorhabditis elegans Hypothetical pr... 28 5.0
U73946-1|AAB18328.1| 452|Caenorhabditis elegans CeLIM-7 protein. 28 5.0
AF067210-1|AAC16985.1| 452|Caenorhabditis elegans Lim domain fa... 28 5.0
U50199-4|AAA91264.2| 142|Caenorhabditis elegans Abnormal cell l... 27 8.8
U41016-4|AAP46275.1| 809|Caenorhabditis elegans Hypothetical pr... 27 8.8
U41016-2|AAM51496.1| 899|Caenorhabditis elegans Hypothetical pr... 27 8.8
>Z48334-1|CAA88308.1| 214|Caenorhabditis elegans Hypothetical
protein F10B5.1 protein.
Length = 214
Score = 97.5 bits (232), Expect = 7e-21
Identities = 41/48 (85%), Positives = 45/48 (93%)
Frame = +1
Query: 268 LKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQG 411
+KNCGKD FH+R+R HPFHV RINKMLSCAGADRLQTGMRGA+GKPQG
Sbjct: 77 VKNCGKDGFHLRVRKHPFHVTRINKMLSCAGADRLQTGMRGAYGKPQG 124
Score = 87.8 bits (208), Expect = 6e-18
Identities = 42/69 (60%), Positives = 46/69 (66%)
Frame = +3
Query: 114 VPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLAKELRKGSV 293
VPD KIRIFDLG KRA VD FP CVH++S+E E LSSEALEA RIC NKY+ K K
Sbjct: 26 VPDAKIRIFDLGNKRANVDTFPACVHMMSNEREHLSSEALEAARICANKYMVKNCGKDGF 85
Query: 294 PYPHETSPF 320
PF
Sbjct: 86 HLRVRKHPF 94
Score = 87.4 bits (207), Expect = 8e-18
Identities = 41/79 (51%), Positives = 55/79 (69%)
Frame = +2
Query: 416 VXRVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFDKLR 595
V RV IG + S+R + IEA RRAKFKFPGRQ I S+KWGFTK++R++++++R
Sbjct: 126 VARVDIGDILFSMRIKEGNVKHAIEAFRRAKFKFPGRQIIVSSRKWGFTKWDREDYERMR 185
Query: 596 EEGRLANDGCIVXYRPEHG 652
EGRL +DG V + EHG
Sbjct: 186 AEGRLRSDGVGVQLQREHG 204
Score = 60.9 bits (141), Expect = 8e-10
Identities = 24/25 (96%), Positives = 24/25 (96%)
Frame = +2
Query: 38 MGRRPARCYRYCKNKPYPKSRFCRG 112
MGRRPARCYRY KNKPYPKSRFCRG
Sbjct: 1 MGRRPARCYRYIKNKPYPKSRFCRG 25
>AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical
protein F53H1.4a protein.
Length = 1370
Score = 32.3 bits (70), Expect = 0.31
Identities = 20/92 (21%), Positives = 41/92 (44%)
Frame = +1
Query: 28 KDHHGAPASEMLPVLQK*TVSEIEVLSGLYLIPRSVSSIWVRRERPLTTFHCACTWCPTN 207
K G+P+S+ P+ E + G+ + + W RR+ L ++ AC+WC N
Sbjct: 306 KKDTGSPSSKNAPLFSPSKWGEKRIAVGV----KKMEDAWKRRD--LELYNEACSWCEKN 359
Query: 208 MNS*AQRLWRQDVSAAISTSLKNCGKDQFHIR 303
++ + + + L + KD+ H++
Sbjct: 360 LSGNQRSTFENPIFKFSVQKLVDKAKDRAHMK 391
>Z46791-1|CAA86761.1| 476|Caenorhabditis elegans Hypothetical
protein C09G5.2 protein.
Length = 476
Score = 28.3 bits (60), Expect = 5.0
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -2
Query: 404 GLPNAPRIPVWSLSAPA 354
G PN+P +P+W LS P+
Sbjct: 232 GFPNSPLLPIWLLSYPS 248
>U73946-1|AAB18328.1| 452|Caenorhabditis elegans CeLIM-7 protein.
Length = 452
Score = 28.3 bits (60), Expect = 5.0
Identities = 35/130 (26%), Positives = 46/130 (35%), Gaps = 12/130 (9%)
Frame = +1
Query: 64 PVLQK*TVSEIEVLSGLYLIPRSVSSIWVRRERPLTTFHCACTWC-----PTNMNS*A-- 222
PV Q+ + V +G L +S + R P FH C C P + N A
Sbjct: 43 PVEQRQHQPPMAVCAGCRL---EISDRYFLRVNPNLEFHAQCLKCVQCSRPLDENQTAFV 99
Query: 223 ---QRLWRQDVSAAISTSLKNCGKD--QFHIRMRLHPFHVIRINKMLSCAGADRLQTGMR 387
Q R D +T C D + + MR P +V +N A RLQTG
Sbjct: 100 KNGQTYCRDDYRRLFTTRCSRCHGDFDKTDLVMRAGPQNVFHLNCFACVACEKRLQTGEE 159
Query: 388 GAFGKPQGYC 417
YC
Sbjct: 160 FQIKNNSLYC 169
>AF067210-1|AAC16985.1| 452|Caenorhabditis elegans Lim domain
family protein 7 protein.
Length = 452
Score = 28.3 bits (60), Expect = 5.0
Identities = 35/130 (26%), Positives = 46/130 (35%), Gaps = 12/130 (9%)
Frame = +1
Query: 64 PVLQK*TVSEIEVLSGLYLIPRSVSSIWVRRERPLTTFHCACTWC-----PTNMNS*A-- 222
PV Q+ + V +G L +S + R P FH C C P + N A
Sbjct: 43 PVEQRQHQPPMAVCAGCRL---EISDRYFLRVNPNLEFHAQCLKCVQCSRPLDENQTAFV 99
Query: 223 ---QRLWRQDVSAAISTSLKNCGKD--QFHIRMRLHPFHVIRINKMLSCAGADRLQTGMR 387
Q R D +T C D + + MR P +V +N A RLQTG
Sbjct: 100 KNGQTYCRDDYRRLFTTRCSRCHGDFDKTDLVMRAGPQNVFHLNCFACVACEKRLQTGEE 159
Query: 388 GAFGKPQGYC 417
YC
Sbjct: 160 FQIKNNSLYC 169
>U50199-4|AAA91264.2| 142|Caenorhabditis elegans Abnormal cell
lineage protein 32 protein.
Length = 142
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 426 FALDSPSCPCALVTGGRHRSSRLCAVPSSSSPDVKR 533
F+LDSP+ P +L GG + C + SP + R
Sbjct: 36 FSLDSPNYPDSLSNGGGKDDKKKCRRYKTPSPQLLR 71
>U41016-4|AAP46275.1| 809|Caenorhabditis elegans Hypothetical
protein R11G1.6d protein.
Length = 809
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/50 (30%), Positives = 20/50 (40%)
Frame = -3
Query: 319 KGEVSCGYGTDPFRSSLARYLLQQIRPASKASELSCSYSSDTKCTHSGKS 170
KG +C RSS ++ Q R +C Y +D CT S S
Sbjct: 733 KGGATCNVCQQRIRSSFSKQAYQ-CRDCKMVCHKTCHYKTDAFCTQSNVS 781
>U41016-2|AAM51496.1| 899|Caenorhabditis elegans Hypothetical
protein R11G1.6a protein.
Length = 899
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/50 (30%), Positives = 20/50 (40%)
Frame = -3
Query: 319 KGEVSCGYGTDPFRSSLARYLLQQIRPASKASELSCSYSSDTKCTHSGKS 170
KG +C RSS ++ Q R +C Y +D CT S S
Sbjct: 823 KGGATCNVCQQRIRSSFSKQAYQ-CRDCKMVCHKTCHYKTDAFCTQSNVS 871
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,430,651
Number of Sequences: 27780
Number of extensions: 363581
Number of successful extensions: 1015
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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