Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_N04
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 157 1e-39
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 96 5e-21
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 93 3e-20
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 77 2e-15
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 49 7e-07
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 46 4e-06
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 45 1e-05
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 40 4e-04
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 36 0.004
SPAC1296.04 |mug65||spore wall assembly protein |Schizosaccharom... 27 3.1
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 26 4.1
SPBC1921.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 5.5
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 25 9.5
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 157 bits (381), Expect = 1e-39
Identities = 68/74 (91%), Positives = 71/74 (95%)
Frame = +1
Query: 199 VMVGMGXKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHP 378
+MVGMG KDSYVGDEAQSKRGILTLKYPIEHGI+ NWDDMEKIWHHTFYNELRVAPEEHP
Sbjct: 43 IMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHP 102
Query: 379 VLLTEAPLNPKANR 420
LLTEAPLNPK+NR
Sbjct: 103 CLLTEAPLNPKSNR 116
Score = 147 bits (356), Expect = 1e-36
Identities = 69/77 (89%), Positives = 74/77 (96%)
Frame = +2
Query: 422 QKMTXIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAIL 601
+KMT I+FETFN+PA YVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAI+
Sbjct: 117 EKMTQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIM 176
Query: 602 RLDLAGRDLTDYLMXIL 652
RLDLAGRDLTDYLM IL
Sbjct: 177 RLDLAGRDLTDYLMKIL 193
Score = 81.8 bits (193), Expect = 8e-17
Identities = 34/39 (87%), Positives = 39/39 (100%)
Frame = +3
Query: 75 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH 191
++++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH 40
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 95.9 bits (228), Expect = 5e-21
Identities = 44/77 (57%), Positives = 57/77 (74%)
Frame = +2
Query: 422 QKMTXIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAIL 601
+KM MFE + +YVAIQAVLSLYA G ++G+V+DSGDGV+H VP+YE L H +
Sbjct: 117 EKMCETMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVG 176
Query: 602 RLDLAGRDLTDYLMXIL 652
RLD+AGRD T YL+ +L
Sbjct: 177 RLDVAGRDATRYLISLL 193
Score = 81.0 bits (191), Expect = 1e-16
Identities = 32/67 (47%), Positives = 51/67 (76%)
Frame = +1
Query: 220 KDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 399
KD VGDEA++ R +L +KYP+E+GII ++++M ++W +TF+ +L++ P +LLTE P
Sbjct: 50 KDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPP 109
Query: 400 LNPKANR 420
+NP ANR
Sbjct: 110 MNPVANR 116
Score = 46.8 bits (106), Expect = 3e-06
Identities = 20/33 (60%), Positives = 25/33 (75%)
Frame = +3
Query: 87 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 185
A +V+DNG+G K G+A D+ PR FPSIVGRP
Sbjct: 4 APIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 93.1 bits (221), Expect = 3e-20
Identities = 39/73 (53%), Positives = 58/73 (79%)
Frame = +2
Query: 422 QKMTXIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAIL 601
+K+ +ET N PA+ ++Q VL+LYAS RTTGIVL+ GDG++H+VPIY+G+++P AI
Sbjct: 122 EKIAEYFYETLNVPALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQ 181
Query: 602 RLDLAGRDLTDYL 640
+ ++ GRD+TDYL
Sbjct: 182 QEEIGGRDVTDYL 194
Score = 80.2 bits (189), Expect = 2e-16
Identities = 37/69 (53%), Positives = 48/69 (69%), Gaps = 1/69 (1%)
Frame = +1
Query: 199 VMVGMGXKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYN-ELRVAPEEH 375
VM KD +VG EAQ+ RG+L ++ PIE GII NW DME+IW + + + +L PEEH
Sbjct: 47 VMPSSIQKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEH 106
Query: 376 PVLLTEAPL 402
P+LLTE PL
Sbjct: 107 PLLLTEPPL 115
Score = 52.8 bits (121), Expect = 4e-08
Identities = 21/38 (55%), Positives = 28/38 (73%)
Frame = +3
Query: 81 DVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 194
D + +DNGSG KAGFAGDD P+ +FP+ VGR +H+
Sbjct: 8 DNQPICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHE 45
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 77.0 bits (181), Expect = 2e-15
Identities = 40/98 (40%), Positives = 55/98 (56%), Gaps = 4/98 (4%)
Frame = +1
Query: 139 ATTRPAPSSRPSWVALATRXVMVGMGXK---DSYVGDEAQSKRGI-LTLKYPIEHGIITN 306
A++ PA SS+PS++A + D ++G++A K +L YPI HG I N
Sbjct: 42 ASSGPAVSSKPSYMASKGSGHLSSKRATEDLDFFIGNDALKKASAGYSLDYPIRHGQIEN 101
Query: 307 WDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR 420
WD ME+ W + + LR PE+H LLTE PLNP NR
Sbjct: 102 WDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENR 139
Score = 74.1 bits (174), Expect = 2e-14
Identities = 37/80 (46%), Positives = 54/80 (67%), Gaps = 8/80 (10%)
Frame = +2
Query: 437 IMFETFNSPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALPH 592
IMFE+FN +Y+A+QAVL+L AS + TG V+DSGDGV+H +P+ EGY +
Sbjct: 145 IMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGS 204
Query: 593 AILRLDLAGRDLTDYLMXIL 652
+I + LAGRD+T ++ +L
Sbjct: 205 SIKTMPLAGRDVTYFVQSLL 224
Score = 40.7 bits (91), Expect = 2e-04
Identities = 14/28 (50%), Positives = 23/28 (82%)
Frame = +3
Query: 93 LVVDNGSGMCKAGFAGDDAPRAVFPSIV 176
+++DNG+G K G+AG+DAP VFP+++
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 48.8 bits (111), Expect = 7e-07
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Frame = +2
Query: 428 MTXIMFETFNSPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVSHTVPIYEGYALPHAIL 601
MT ++FE +N+P++ I + S Y + + ++GIVL+ G+ SH +P+ G +
Sbjct: 134 MTELLFELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVIPVLNGERILSEAK 193
Query: 602 RLDLAGRDLTDYLMXI 649
R+ G + YL+ +
Sbjct: 194 RISWGGSQSSSYLLKL 209
Score = 41.9 bits (94), Expect = 8e-05
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Frame = +1
Query: 232 VGDEAQSKRGILTL-KYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNP 408
VG++ + G ++ + P E +I+NWD ME++ +TF +L + EHP+ +TE NP
Sbjct: 69 VGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANP 127
Score = 35.9 bits (79), Expect = 0.005
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +3
Query: 93 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 188
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 46.4 bits (105), Expect = 4e-06
Identities = 19/54 (35%), Positives = 30/54 (55%)
Frame = +1
Query: 265 LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRAE 426
+ +K I +G + NWD +W + +L+ P EHP+L+TE NP NR +
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVK 116
Score = 43.2 bits (97), Expect = 3e-05
Identities = 24/76 (31%), Positives = 35/76 (46%)
Frame = +2
Query: 425 KMTXIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILR 604
K MFE+ PA Y+A Q + +ASG+ T ++D G S IY+G+ L
Sbjct: 116 KTLETMFESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVLQKGYQV 175
Query: 605 LDLAGRDLTDYLMXIL 652
+G + D L L
Sbjct: 176 QHFSGNAINDILAQTL 191
Score = 40.7 bits (91), Expect = 2e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +3
Query: 78 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 179
D+V+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 44.8 bits (101), Expect = 1e-05
Identities = 24/74 (32%), Positives = 37/74 (50%)
Frame = +2
Query: 431 TXIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLD 610
T FE P +A + ++ LYA G G+V+D G + PI +G + A +L
Sbjct: 166 TQFFFEECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLP 225
Query: 611 LAGRDLTDYLMXIL 652
L GR +T +L +L
Sbjct: 226 LGGRYMTQHLQNLL 239
Score = 25.4 bits (53), Expect = 7.2
Identities = 6/21 (28%), Positives = 13/21 (61%)
Frame = +1
Query: 280 PIEHGIITNWDDMEKIWHHTF 342
PI+ G + +W+ ++ W H +
Sbjct: 113 PIQRGRVVDWEALKAFWKHLY 133
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 39.5 bits (88), Expect = 4e-04
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = +1
Query: 220 KDSYVGDEAQSKRGI--LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 393
++ YV DE Q I + +K +GII +W+ W +L+V P E+ +++TE
Sbjct: 49 RNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITE 108
Query: 394 APLNPKANRAE 426
NP++ R +
Sbjct: 109 PSWNPQSVRQQ 119
Score = 34.3 bits (75), Expect = 0.016
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +3
Query: 78 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 179
+++ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 36.3 bits (80), Expect = 0.004
Identities = 14/43 (32%), Positives = 27/43 (62%)
Frame = +2
Query: 524 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMXIL 652
+V+DSG +H +P+ + A+ R+D+ G+ LT+YL ++
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVI 201
>SPAC1296.04 |mug65||spore wall assembly protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 26.6 bits (56), Expect = 3.1
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +3
Query: 567 STKVTLCPTPSSVWTW 614
STK CP PS W W
Sbjct: 52 STKTATCPDPSWEWAW 67
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 26.2 bits (55), Expect = 4.1
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = -1
Query: 303 GDDTVLDGVLQSEDTSLALGLVTHVGVFXAHTDHHXPG 190
GDD+VLD V +D L L AH D H G
Sbjct: 676 GDDSVLDTVTAGKDVYAFLNLFFAKFPQYAHLDFHIAG 713
>SPBC1921.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 117
Score = 25.8 bits (54), Expect = 5.5
Identities = 10/48 (20%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -1
Query: 558 VWETPSPESSTIPVVRPEAYSESTAWMATY--MAGELKVSNMXWVIFC 421
+W P+ ++ TIP + + + W + Y G+L+++ + ++ C
Sbjct: 39 IWLWPTYDAQTIPWKKKKKSEQHELWASVYNRTIGKLQLNKLTFIDLC 86
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 184 LATRXVMVGMGXKDSYVGDEAQSKRGILTLKYPI 285
L+ +M+G +Y+G AQ KR +LT + I
Sbjct: 160 LSQYAIMIGAIHGFAYIGLAAQGKRALLTARVTI 193
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,423,467
Number of Sequences: 5004
Number of extensions: 45650
Number of successful extensions: 189
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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