Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_N04
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   3.4  
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    22   6.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.9  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   7.9  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 360 DTQLIVEGVVPDLLHVI 310
           + Q +V+ V PD+LH+I
Sbjct: 21  NNQTVVDKVPPDMLHLI 37


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = -1

Query: 528 TIPVVRPEAYSESTAWMATYMAGELKVSNMXWVIF 424
           T+P  + E   +  AWM     G L+  N  +  F
Sbjct: 33  TLPGYKIECVGDDIAWMKFDKEGRLRAINPEYGFF 67


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 14/45 (31%), Positives = 16/45 (35%)
 Frame = +1

Query: 25  VNTSVPNTNTHKVQRCATTMLLRL*STMAPACARPVSPATTRPAP 159
           +N   PNT T KV      M   +  TM          A  RP P
Sbjct: 629 INLVRPNTFTDKVNLTRVDMYANMIETMELTSLLLTKVAEDRPLP 673


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 178  VALATRXVMVGMGXKDSYVGDEAQ 249
            VAL    V+V +  +  Y+GD  Q
Sbjct: 1622 VALVVAVVIVALRWRSRYLGDRMQ 1645


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 178  VALATRXVMVGMGXKDSYVGDEAQ 249
            VAL    V+V +  +  Y+GD  Q
Sbjct: 1618 VALVVAVVIVALRWRSRYLGDRMQ 1641


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 114 GMCKAGFAGD 143
           GMCK G +GD
Sbjct: 130 GMCKEGISGD 139


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,709
Number of Sequences: 438
Number of extensions: 3268
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)