Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_M24
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch... 154 9e-39
SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyce... 29 0.59
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 26 4.1
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ... 26 5.5
SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase |... 26 5.5
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 25 7.2
SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 7.2
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 25 7.2
SPBC3B9.03 |||signal recognition particle receptor alpha subunit... 25 7.2
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha... 25 9.5
>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 382
Score = 154 bits (374), Expect = 9e-39
Identities = 68/104 (65%), Positives = 88/104 (84%)
Frame = +2
Query: 143 DKMCDQISDAILXAHLNQDPDAKVACETITKTGMVLLCGEITSKANVDYQKVVRETVKHI 322
DK+CDQISDAIL A L DP +KVACET +KTGMV++ GEIT+++ +DYQKV+R T+K I
Sbjct: 18 DKICDQISDAILDACLKDDPFSKVACETASKTGMVMVFGEITTRSQIDYQKVIRNTIKSI 77
Query: 323 GYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHENRNDEEVGAGD 454
GYDDS KGFDYKTC+V++A++QQSP+IA G+H + EE+GAGD
Sbjct: 78 GYDDSEKGFDYKTCNVLVAIEQQSPDIAQGLHYEKALEELGAGD 121
Score = 78.2 bits (184), Expect = 1e-15
Identities = 36/72 (50%), Positives = 47/72 (65%)
Frame = +3
Query: 438 KLGQETXXLMFGYATDXTEXCMPLTVVLAHKLNQKIAXLXRNGEFWWARPXSKTQVTCEY 617
+LG +MFGYATD T +PLT++LAHKLN ++ R+G W RP +KTQVT EY
Sbjct: 116 ELGAGDQGIMFGYATDETPEKLPLTILLAHKLNAAMSVARRDGSLPWLRPDTKTQVTIEY 175
Query: 618 VFAGGATVPQRV 653
GA +P+RV
Sbjct: 176 EEENGAVIPRRV 187
>SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 851
Score = 29.1 bits (62), Expect = 0.59
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Frame = +2
Query: 104 SLHKILNMLYITADKMCDQ---ISDAILXAHLNQDPDAKV 214
S+ + L+ + +TA K D +SDAIL HL +D DA V
Sbjct: 626 SVKEYLSKITLTAAKQADDQGLLSDAILLYHLAEDYDAAV 665
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/40 (35%), Positives = 16/40 (40%)
Frame = -1
Query: 477 HNRTSXRWSPAPTSSSFLFSCTPAAMFGDCWSSASITLHV 358
HNR SPA S + S +FG C S T V
Sbjct: 102 HNRGEDNDSPARVGHSIVCSADTIYLFGGCDSETDSTFEV 141
>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = -3
Query: 376 EHHTACLVIKAFGRIIITNMFDRFAHNFLIIHVSFGCDFATQ 251
EH+ C+ + G ++++ DR + I +S C F T+
Sbjct: 101 EHNIPCITFNSSGTLLLSGSIDRSLQIWDITSLSCLCKFYTK 142
>SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 266
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +2
Query: 272 KANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQ 391
+ N DY K+ E VK G D+ K C ++ L Q+
Sbjct: 106 EVNEDYAKIAYELVKLAGLDEIVTIMIGKACDSLVELQQK 145
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 9/51 (17%)
Frame = -2
Query: 587 WSCPPKFSISXELCNFLIEF---------VCKHYSQRHAXFCXICCITEHQ 462
W C PK ++ C FL F KH ++R C C + HQ
Sbjct: 46 WVCDPKLQVAVRECLFLFSFQNDNEYLVWFKKHLNER-LQLCPKCIVKYHQ 95
>SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 492
Score = 25.4 bits (53), Expect = 7.2
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -1
Query: 159 WSHILSAVMYNILSILCKL 103
W H L A +N+LS +C++
Sbjct: 126 WQHKLKAPFFNMLSFVCEM 144
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -1
Query: 525 VQALQSTACIXLXHLLHNRTSXRWSPAPTSSSFLFSCTPA 406
+Q LQS+ C + +L H S R SSFL TP+
Sbjct: 94 LQELQSSFCSGIENLQHVEKSARIETYSKLSSFLKIYTPS 133
>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
Srp101|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -2
Query: 407 QQCLVIVGLVRASHCMSCNQSLWTNHHNQYV*PFRAQLFD 288
Q +V V + + CM+ +QSL + HN ++ F+ +L D
Sbjct: 61 QYSIVFVVVFQDLKCMAYSQSLLNSAHNIFLNLFKEKLED 100
>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
Wis1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 605
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -1
Query: 321 ICLTVSRTTF**STLALDVISPHKSTIPVLVMVSHATFASGS*FRC 184
I L++ TF + LD++ HK+ P +V A F GS F C
Sbjct: 351 IRLSLEEATFNQIIMELDIL--HKAVSPYIVDFYGAFFVEGSVFIC 394
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,772,163
Number of Sequences: 5004
Number of extensions: 54989
Number of successful extensions: 145
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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