Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_M24
(654 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0264 + 2030080-2031270 134 6e-32
01_02_0051 - 10655867-10657057 131 4e-31
01_03_0090 - 12347165-12348349 130 7e-31
04_04_0978 - 29856872-29858023 31 0.80
10_06_0022 - 9716537-9716649,9716709-9716826,9716958-9717076,971... 31 1.1
10_06_0023 - 9727326-9727438,9727835-9727903,9727965-9728082,972... 29 4.3
>05_01_0264 + 2030080-2031270
Length = 396
Score = 134 bits (324), Expect = 6e-32
Identities = 61/106 (57%), Positives = 83/106 (78%), Gaps = 2/106 (1%)
Frame = +2
Query: 143 DKMCDQISDAILXAHLNQDPDAKVACETITKTGMVLLCGEITSKANVDYQKVVRETVKHI 322
DK+CDQ+SDA+L A L +DPD+KVACET TKT MV++ GEIT+KANVDY+K+VRET ++I
Sbjct: 20 DKLCDQVSDAVLDACLAEDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRETCRNI 79
Query: 323 GYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHEN--RNDEEVGAGD 454
G+ + G D C V++ ++QQSP+IA GVH + + EE+GAGD
Sbjct: 80 GFVSADVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEEIGAGD 125
Score = 69.7 bits (163), Expect = 2e-12
Identities = 36/77 (46%), Positives = 44/77 (57%)
Frame = +3
Query: 423 TEMTRKLGQETXXLMFGYATDXTEXCMPLTVVLAHKLNQKIAXLXRNGEFWWARPXSKTQ 602
T+ ++G MFGYATD T MPL+ VLA KL ++ + +NG W RP KTQ
Sbjct: 115 TKRPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQ 174
Query: 603 VTCEYVFAGGATVPQRV 653
VT EY GA VP RV
Sbjct: 175 VTVEYRNESGARVPVRV 191
>01_02_0051 - 10655867-10657057
Length = 396
Score = 131 bits (317), Expect = 4e-31
Identities = 60/106 (56%), Positives = 83/106 (78%), Gaps = 2/106 (1%)
Frame = +2
Query: 143 DKMCDQISDAILXAHLNQDPDAKVACETITKTGMVLLCGEITSKANVDYQKVVRETVKHI 322
DK+CDQISDA+L A L +DP++KVACET TKT MV++ GEIT+KANVDY+K+VR+T + I
Sbjct: 20 DKLCDQISDAVLDACLAEDPESKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRGI 79
Query: 323 GYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHEN--RNDEEVGAGD 454
G+ + G D + C V++ ++QQSP+IA GVH + + EE+GAGD
Sbjct: 80 GFVSNDVGLDAEHCKVLVNIEQQSPDIAQGVHGHFTKRPEEIGAGD 125
Score = 69.7 bits (163), Expect = 2e-12
Identities = 36/77 (46%), Positives = 44/77 (57%)
Frame = +3
Query: 423 TEMTRKLGQETXXLMFGYATDXTEXCMPLTVVLAHKLNQKIAXLXRNGEFWWARPXSKTQ 602
T+ ++G MFGYATD T MPL+ VLA KL ++ + +NG W RP KTQ
Sbjct: 115 TKRPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGACAWLRPDGKTQ 174
Query: 603 VTCEYVFAGGATVPQRV 653
VT EY GA VP RV
Sbjct: 175 VTVEYQNDNGAMVPLRV 191
>01_03_0090 - 12347165-12348349
Length = 394
Score = 130 bits (315), Expect = 7e-31
Identities = 60/106 (56%), Positives = 80/106 (75%), Gaps = 2/106 (1%)
Frame = +2
Query: 143 DKMCDQISDAILXAHLNQDPDAKVACETITKTGMVLLCGEITSKANVDYQKVVRETVKHI 322
DK+CDQ+SDA+L A L QDPD+KVACET TKT MV++ GEIT+KA VDY+K+VR+T + I
Sbjct: 19 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKATVDYEKIVRDTCRGI 78
Query: 323 GYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHEN--RNDEEVGAGD 454
G+ G D C V++ ++QQSP+IA GVH + + EE+GAGD
Sbjct: 79 GFVSDDVGLDADRCKVLVNIEQQSPDIAQGVHGHFTKRPEEIGAGD 124
Score = 70.9 bits (166), Expect = 8e-13
Identities = 36/77 (46%), Positives = 45/77 (58%)
Frame = +3
Query: 423 TEMTRKLGQETXXLMFGYATDXTEXCMPLTVVLAHKLNQKIAXLXRNGEFWWARPXSKTQ 602
T+ ++G MFGYATD T MPL+ VLA KL ++ + +NG W RP KTQ
Sbjct: 114 TKRPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQ 173
Query: 603 VTCEYVFAGGATVPQRV 653
VT EY+ GA VP RV
Sbjct: 174 VTVEYLNDAGAMVPVRV 190
>04_04_0978 - 29856872-29858023
Length = 383
Score = 31.1 bits (67), Expect = 0.80
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Frame = -2
Query: 587 WSCPPKFSISXELCNFLIEFVCKHYSQR---HAXFCXICCITEHQXXGLLPQLPRHFCSH 417
W+ P + L N + VCK+ H C +C + E L LPR CSH
Sbjct: 124 WNVSPPSGLDETLINKIT--VCKYRRGDGFVHTTDCSVC-LGEFSDGESLRLLPR--CSH 178
Query: 416 APQQQCLVIVGLVRASHCMSCNQSL 342
A QQC + L S+C C ++
Sbjct: 179 AFHQQC-IDTWLKSHSNCPLCRANI 202
>10_06_0022 -
9716537-9716649,9716709-9716826,9716958-9717076,
9717238-9717476,9717793-9717849,9717933-9718019,
9718185-9718729,9718836-9719102
Length = 514
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +2
Query: 212 VACETITKTGMVLLCGEITSKANVDYQKVVRET--VKHIGYDDSSKGFDYKTCSVM 373
+ C +I+K GM+L IT + D+ K VR+ KH GY KG +K+ + M
Sbjct: 444 LVCGSISKVGMLLF---ITLRT--DWGKEVRKPSPYKHFGYHGKRKGLQFKSSNSM 494
>10_06_0023 -
9727326-9727438,9727835-9727903,9727965-9728082,
9728232-9728350,9728506-9728695
Length = 202
Score = 28.7 bits (61), Expect = 4.3
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +2
Query: 212 VACETITKTGMVLLCGEITSKANVDYQKVVRET--VKHIGYDDSSKGFDYKTCSVM 373
+ C +I+K GM+L IT + D+ K V++ KH GY KG +K + M
Sbjct: 109 IVCGSISKVGMLLF---IT--LHTDWGKEVQKASPCKHFGYHAERKGLQFKYSNSM 159
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,336,996
Number of Sequences: 37544
Number of extensions: 364825
Number of successful extensions: 781
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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