Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_M24
         (654 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46130| Best HMM Match : No HMM Matches (HMM E-Value=.)             173   1e-43
SB_11655| Best HMM Match : No HMM Matches (HMM E-Value=.)             162   2e-40
SB_47946| Best HMM Match : No HMM Matches (HMM E-Value=.)             129   2e-30
SB_46129| Best HMM Match : No HMM Matches (HMM E-Value=.)             122   2e-28
SB_16847| Best HMM Match : S-AdoMet_synt_M (HMM E-Value=0)             56   3e-08
SB_53305| Best HMM Match : S-AdoMet_synt_N (HMM E-Value=0.0056)        53   2e-07
SB_15158| Best HMM Match : Cadherin (HMM E-Value=7.5e-23)              31   0.62 
SB_1274| Best HMM Match : PARG_cat (HMM E-Value=2.5e-14)               29   3.3  
SB_16907| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_46130| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 407

 Score =  173 bits (420), Expect = 1e-43
 Identities = 79/107 (73%), Positives = 91/107 (85%)
 Frame = +2

Query: 143 DKMCDQISDAILXAHLNQDPDAKVACETITKTGMVLLCGEITSKANVDYQKVVRETVKHI 322
           DKMCDQISDAIL AHL QDP+AKVACET+ KTGM+LLCGEITS A VDYQ VVR+ +K I
Sbjct: 44  DKMCDQISDAILDAHLKQDPNAKVACETVAKTGMILLCGEITSNAVVDYQSVVRQCIKDI 103

Query: 323 GYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHENRNDEEVGAGDXRL 463
           GYDDS KGFDYKTC+V++AL+QQS +IA GVH  R +E+VGAGD  L
Sbjct: 104 GYDDSEKGFDYKTCNVLVALEQQSVDIAHGVHVGREEEDVGAGDQGL 150



 Score = 91.5 bits (217), Expect = 5e-19
 Identities = 44/71 (61%), Positives = 49/71 (69%)
 Frame = +3

Query: 441 LGQETXXLMFGYATDXTEXCMPLTVVLAHKLNQKIAXLXRNGEFWWARPXSKTQVTCEYV 620
           +G     LMFGYATD TE  MPLTVVLAHK+NQK+A   R+G   WARP SKTQVT EY 
Sbjct: 143 VGAGDQGLMFGYATDETEELMPLTVVLAHKMNQKLAEYRRDGTLPWARPDSKTQVTVEYK 202

Query: 621 FAGGATVPQRV 653
           F  G  +P RV
Sbjct: 203 FEHGRAIPLRV 213


>SB_11655| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 428

 Score =  162 bits (394), Expect = 2e-40
 Identities = 76/108 (70%), Positives = 87/108 (80%)
 Frame = +2

Query: 140 ADKMCDQISDAILXAHLNQDPDAKVACETITKTGMVLLCGEITSKANVDYQKVVRETVKH 319
           +DKMCDQISDA+L AHL QDP AKVACET TKTG+VLL GEITS A VDYQ VVR T++ 
Sbjct: 64  SDKMCDQISDAVLDAHLEQDPYAKVACETATKTGLVLLFGEITSNARVDYQAVVRNTIRD 123

Query: 320 IGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHENRNDEEVGAGDXRL 463
           IGY+DSS GFDYKTCSV+LA+ +Q   IA  VH NR D+E+GAGD  L
Sbjct: 124 IGYNDSSTGFDYKTCSVLLAIQEQVAEIAQTVHLNRRDDEIGAGDQGL 171



 Score = 71.3 bits (167), Expect = 6e-13
 Identities = 35/72 (48%), Positives = 43/72 (59%)
 Frame = +3

Query: 438 KLGQETXXLMFGYATDXTEXCMPLTVVLAHKLNQKIAXLXRNGEFWWARPXSKTQVTCEY 617
           ++G     LMFGYATD TE  MPLT VLAHKL  ++A   +     W  P  KTQVT +Y
Sbjct: 163 EIGAGDQGLMFGYATDETEELMPLTTVLAHKLCARLAECRKGKILPWLLPDGKTQVTVDY 222

Query: 618 VFAGGATVPQRV 653
               GA +P+RV
Sbjct: 223 RLERGACIPERV 234


>SB_47946| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 460

 Score =  129 bits (312), Expect = 2e-30
 Identities = 56/80 (70%), Positives = 71/80 (88%)
 Frame = +2

Query: 224 TITKTGMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNI 403
           ++ KTGM+++CGEITS ANVDYQKVVR+T+K IGYDDSSKGFDYKTC+V+ A++QQSP+I
Sbjct: 2   SVAKTGMIVVCGEITSLANVDYQKVVRDTIKQIGYDDSSKGFDYKTCTVLQAIEQQSPDI 61

Query: 404 AAGVHENRNDEEVGAGDXRL 463
           A GVH  R+DE++GAGD  L
Sbjct: 62  AQGVHIGRSDEDLGAGDQGL 81



 Score = 91.1 bits (216), Expect = 7e-19
 Identities = 44/71 (61%), Positives = 48/71 (67%)
 Frame = +3

Query: 441 LGQETXXLMFGYATDXTEXCMPLTVVLAHKLNQKIAXLXRNGEFWWARPXSKTQVTCEYV 620
           LG     LMFGYATD T+  MPLTVVLAH LN+++A   RNG   W RP SKTQVT EY 
Sbjct: 74  LGAGDQGLMFGYATDETDELMPLTVVLAHGLNKRLADCRRNGSLPWVRPDSKTQVTVEYK 133

Query: 621 FAGGATVPQRV 653
           F GG  VP RV
Sbjct: 134 FQGGKAVPLRV 144


>SB_46129| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score =  122 bits (295), Expect = 2e-28
 Identities = 54/67 (80%), Positives = 62/67 (92%)
 Frame = +2

Query: 143 DKMCDQISDAILXAHLNQDPDAKVACETITKTGMVLLCGEITSKANVDYQKVVRETVKHI 322
           DKMCDQISDAIL AHL QDP+AKVACE++ KTGM+++CGEITS ANVDYQKVVR+T+K I
Sbjct: 24  DKMCDQISDAILDAHLKQDPNAKVACESVAKTGMIVVCGEITSLANVDYQKVVRDTIKQI 83

Query: 323 GYDDSSK 343
           GYDDSSK
Sbjct: 84  GYDDSSK 90


>SB_16847| Best HMM Match : S-AdoMet_synt_M (HMM E-Value=0)
          Length = 192

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 25/52 (48%), Positives = 34/52 (65%)
 Frame = +3

Query: 462 LMFGYATDXTEXCMPLTVVLAHKLNQKIAXLXRNGEFWWARPXSKTQVTCEY 617
           LMFGYAT+ T+  MP  V  AH+L ++ + L RNG   W RP +K+QVT  +
Sbjct: 17  LMFGYATNETDSLMPAPVYYAHRLVERQSELRRNGTLPWLRPDAKSQVTINW 68


>SB_53305| Best HMM Match : S-AdoMet_synt_N (HMM E-Value=0.0056)
          Length = 70

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 23/26 (88%), Positives = 24/26 (92%)
 Frame = +2

Query: 143 DKMCDQISDAILXAHLNQDPDAKVAC 220
           DKMCDQISDAIL AHL QDP+AKVAC
Sbjct: 44  DKMCDQISDAILDAHLKQDPNAKVAC 69


>SB_15158| Best HMM Match : Cadherin (HMM E-Value=7.5e-23)
          Length = 390

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = +2

Query: 257 GEITSKANVDYQKVVRETV---KHIGYDDSSKGFDYK 358
           GEITS  N+D +K+    +   K I YD    G+DY+
Sbjct: 103 GEITSNVNIDREKLPGSNLLEFKAIAYDAKGAGYDYR 139


>SB_1274| Best HMM Match : PARG_cat (HMM E-Value=2.5e-14)
          Length = 334

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
 Frame = -2

Query: 479 CITEHQXXGLLPQ--LPRHFCSHAPQQQCLVIVGLVRASHCMSCNQSL-WTNHHN 324
           C+ E     + P+  L R FC      +C+ I+G  R S+      +  W  HH+
Sbjct: 91  CVQEEIRFLICPEMILSRLFCERLDSNECVFIIGAQRFSNYTGYAHTFKWAGHHD 145


>SB_16907| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 886

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/71 (23%), Positives = 29/71 (40%)
 Frame = +2

Query: 140 ADKMCDQISDAILXAHLNQDPDAKVACETITKTGMVLLCGEITSKANVDYQKVVRETVKH 319
           A  M   + D  + AH  Q+P+      TI+   M    G+  + A +++     E  +H
Sbjct: 600 AGNMSHPVRDTTITAHGYQEPNEPTVSHTISNAAMAAPWGQQPANAPLEFPPSSEE--EH 657

Query: 320 IGYDDSSKGFD 352
            G   +  G D
Sbjct: 658 DGLAATESGVD 668


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,648,074
Number of Sequences: 59808
Number of extensions: 452702
Number of successful extensions: 803
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)