Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_M23
         (629 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L36067-1|AAA29362.1|  229|Anopheles gambiae polyubiquitin protein.    114   2e-27
AF510715-1|AAP47144.1|  470|Anopheles gambiae Rh-like glycoprote...    26   1.1  
AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic acetylch...    24   4.6  
AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic acetylch...    24   4.6  
AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein p...    23   8.0  

>L36067-1|AAA29362.1|  229|Anopheles gambiae polyubiquitin protein.
          Length = 229

 Score =  114 bits (275), Expect = 2e-27
 Identities = 54/56 (96%), Positives = 56/56 (100%)
 Frame = +2

Query: 89  LQVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 256
           L+VEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 15  LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70



 Score =  114 bits (275), Expect = 2e-27
 Identities = 54/56 (96%), Positives = 56/56 (100%)
 Frame = +2

Query: 89  LQVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 256
           L+VEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 91  LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 146



 Score =  114 bits (275), Expect = 2e-27
 Identities = 54/56 (96%), Positives = 56/56 (100%)
 Frame = +2

Query: 89  LQVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 256
           L+VEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 167 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 222



 Score = 33.1 bits (72), Expect = 0.007
 Identities = 15/15 (100%), Positives = 15/15 (100%)
 Frame = +1

Query: 46 MQIFVKTLTGKTITL 90
          MQIFVKTLTGKTITL
Sbjct: 1  MQIFVKTLTGKTITL 15



 Score = 33.1 bits (72), Expect = 0.007
 Identities = 15/15 (100%), Positives = 15/15 (100%)
 Frame = +1

Query: 46  MQIFVKTLTGKTITL 90
           MQIFVKTLTGKTITL
Sbjct: 77  MQIFVKTLTGKTITL 91



 Score = 33.1 bits (72), Expect = 0.007
 Identities = 15/15 (100%), Positives = 15/15 (100%)
 Frame = +1

Query: 46  MQIFVKTLTGKTITL 90
           MQIFVKTLTGKTITL
Sbjct: 153 MQIFVKTLTGKTITL 167


>AF510715-1|AAP47144.1|  470|Anopheles gambiae Rh-like glycoprotein
           protein.
          Length = 470

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +3

Query: 36  ESEDANFRKDPHGQDHH 86
           ESE  N RK PH QD H
Sbjct: 50  ESEGGNLRKYPHFQDIH 66


>AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 529 LEGTYLFVVVFEDHRAVTLPAVVTVLHHR 443
           L GTY   ++F    +V L  VV   HHR
Sbjct: 293 LLGTYFNCIMFMVASSVVLTVVVLNYHHR 321


>AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 529 LEGTYLFVVVFEDHRAVTLPAVVTVLHHR 443
           L GTY   ++F    +V L  VV   HHR
Sbjct: 293 LLGTYFNCIMFMVASSVVLTVVVLNYHHR 321


>AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein
           protein.
          Length = 1077

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = -2

Query: 547 ASVSYRLEGTYLFVVVFEDHRAVTLPAVVTVLHHRHEHSG 428
           +S+  +L  T + V+ F DH+A+T+   +    +R  ++G
Sbjct: 207 SSLETQLRTTDMHVLSFSDHKALTVRLCLPTPPNRLTNNG 246


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 606,283
Number of Sequences: 2352
Number of extensions: 13066
Number of successful extensions: 47
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 61468785
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)