Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_M20
         (641 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    22   3.7  
AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    22   4.9  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    21   8.6  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   8.6  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   8.6  

>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +3

Query: 144 DNKENSDPSKSDKLKVDILLKAT 212
           ++K+N  P+K +K+ + I+ K T
Sbjct: 105 EHKKNPYPTKGEKIMLAIITKMT 127


>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +2

Query: 524 CFIVYFQSYDLEHITKKIIMQPI 592
           C IV F+ Y L H+ + +  + I
Sbjct: 258 CVIVIFELYYLSHVCQNVSTEVI 280


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +1

Query: 283 EFVKKYLKLEADXKLFLYVNQTF 351
           +FV  Y+K+EAD +  +  +++F
Sbjct: 40  DFVAPYIKVEADEEAPVLKSRSF 62


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -3

Query: 225 RSIALSLSVECRLLIYLILMDHYFL 151
           RS++++LS+   L+I  +L   +FL
Sbjct: 552 RSVSMALSIGPPLVIPFLLFGGFFL 576


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -3

Query: 225 RSIALSLSVECRLLIYLILMDHYFL 151
           RS++++LS+   L+I  +L   +FL
Sbjct: 552 RSVSMALSIGPPLVIPFLLFGGFFL 576


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,288
Number of Sequences: 336
Number of extensions: 2851
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16448590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)