Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_M20
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1783.06c |atg12|apg12|autophagy associated protein Atg12|Sch...    73   4e-14
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    28   1.3  
SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi...    26   4.0  
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    26   4.0  
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    26   5.3  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    25   7.0  
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|...    25   9.3  

>SPAC1783.06c |atg12|apg12|autophagy associated protein
           Atg12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 72.9 bits (171), Expect = 4e-14
 Identities = 33/81 (40%), Positives = 52/81 (64%)
 Frame = +1

Query: 205 KRQGNAPIMKKKKWAVDAEKPIGWIMEFVKKYLKLEADXKLFLYVNQTFAPSPDQIVRNL 384
           K  G  P+++K  ++++A +    +  F+KK L L  +  L LYVN +FAPSPD+IV NL
Sbjct: 52  KAIGRTPLLRKTVFSINASQRFEKVTRFLKKELGLPMNSSLVLYVNSSFAPSPDEIVGNL 111

Query: 385 YECFGTDGKLVLHYCKSQAWG 447
           Y+ F  D  L+++YC + A+G
Sbjct: 112 YDNFAIDSHLLINYCINVAFG 132


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = +3

Query: 63  SKMSDEKLIDETQSQS--VAGMEALRIEVDNKENSDPSKSDKLKVD 194
           SK +++K ++ET+S+   V   E   IEVD+KE    SK    KV+
Sbjct: 477 SKETEDK-VEETESKEADVKAKETDSIEVDDKEEKTDSKETADKVE 521


>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
           Dld1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = +3

Query: 123 EALRIEVDNKENSDPSKSDKLKVDILLKATGQCSYNE 233
           +++ +E++N +N+   K +  + D+LL A G+  Y E
Sbjct: 289 DSVEVEIENMKNN---KRETYQTDVLLVAIGRVPYTE 322


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +3

Query: 69  MSDEKLIDETQSQSVAGMEALRIEVDNKENSDPSKSDKLKVD 194
           MSDEKL  E  S S  G +  R    +     P    +LK++
Sbjct: 54  MSDEKLSSEASSHSTLGQQQARDGRQSPSKEAPFGEGELKLE 95


>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 456

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/39 (33%), Positives = 16/39 (41%)
 Frame = +1

Query: 277 IMEFVKKYLKLEADXKLFLYVNQTFAPSPDQIVRNLYEC 393
           +M F+K Y   E   K     N TF PS   +V     C
Sbjct: 415 LMNFMKTYFPREIKEKFEENENDTFTPSSISVVSGQNNC 453


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 235 KKKWAVDAEKPIGWIMEFVKKYLKLEADXKLFLYVN 342
           KK W  +A +    I+EF+++ +   AD  L LY N
Sbjct: 504 KKFWESNAAEYCLAILEFIERCIYYSADRSLELYDN 539


>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 595

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = -3

Query: 180 YLILMDHYF--LCYQLLFSMLPFQPLIGSASHL 88
           +L+++D     +CY  LF   PF P +   SHL
Sbjct: 489 FLVVLDPISKNICYLWLFLYCPFTPFLTVFSHL 521


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,472,657
Number of Sequences: 5004
Number of extensions: 47345
Number of successful extensions: 134
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)