Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_M20
         (641 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U32305-7|AAK18856.1|  118|Caenorhabditis elegans Lc3, gabarap an...    55   4e-08
Z69385-5|CAA93421.1|  130|Caenorhabditis elegans Hypothetical pr...    33   0.17 
Z49887-1|CAA90058.1|  710|Caenorhabditis elegans Hypothetical pr...    31   0.93 
U23511-11|AAC46797.1|  123|Caenorhabditis elegans Lc3, gabarap a...    29   2.8  
AF326943-1|AAG49393.1|  123|Caenorhabditis elegans GABA A recept...    29   2.8  
Z68303-6|CAD89754.1|  708|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z68303-5|CAA92639.2|  706|Caenorhabditis elegans Hypothetical pr...    28   4.9  

>U32305-7|AAK18856.1|  118|Caenorhabditis elegans Lc3, gabarap and
           gate-16 familyprotein 3 protein.
          Length = 118

 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
 Frame = +1

Query: 217 NAPIMKKKKWAVDAEKPIGWIMEFVKKYLKLEADXKLFLYVNQTFAPSPDQIVRNLYECF 396
           +AP++K KK  V+    +   +  ++K L ++A+  LFLY++ TFAPSPD     L  C+
Sbjct: 38  DAPVLKNKKMVVNPTDTVASFILKLRKLLNIQANNSLFLYIDNTFAPSPDTTFETLSRCY 97

Query: 397 G---TDGKLV-LHYCKSQAWG 447
               TD +++ L Y  + A+G
Sbjct: 98  SVKITDKEILELQYSITPAYG 118


>Z69385-5|CAA93421.1|  130|Caenorhabditis elegans Hypothetical
           protein ZK593.6 protein.
          Length = 130

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
 Frame = +1

Query: 223 PIMKKKKWAVDAEKPIGWIMEFVKKYLKLEADXKLFLYVNQTFAPSPDQIVRNLY-ECFG 399
           P+M + K+ V     +  +M  V++ L+L      FL VN+    S    + NLY +   
Sbjct: 55  PLMDRCKFLVPEHITVAELMSIVRRRLQLHPQQAFFLLVNERSMVSNSMSMSNLYSQERD 114

Query: 400 TDGKLVLHYCKSQAWG 447
            DG + + Y    A+G
Sbjct: 115 PDGFVYMVYTSQPAFG 130


>Z49887-1|CAA90058.1|  710|Caenorhabditis elegans Hypothetical
           protein F09B9.1 protein.
          Length = 710

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +1

Query: 235 KKKWAVDAEKPIGWIMEFVKKYLKLEADXKLFLYVNQTFAP 357
           KKK  V+   P+ WIM +V +YL+L     LF+     +AP
Sbjct: 330 KKKMIVN---PVTWIMFYVHRYLRLTPPIMLFIGFFTVYAP 367


>U23511-11|AAC46797.1|  123|Caenorhabditis elegans Lc3, gabarap and
           gate-16 familyprotein 1 protein.
          Length = 123

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +1

Query: 229 MKKKKWAVDAEKPIGWIMEFVKKYLKLEADXKLFLYVNQTFAPSPDQIVRNLYE 390
           + KKK+ V ++  +G     ++K ++L  +  LF +VN    P     +  LY+
Sbjct: 44  LDKKKYLVPSDLTVGQFYFLIRKRIQLRPEDALFFFVNNVI-PQTMTTMGQLYQ 96


>AF326943-1|AAG49393.1|  123|Caenorhabditis elegans GABA A
           receptor-associated protein protein.
          Length = 123

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +1

Query: 229 MKKKKWAVDAEKPIGWIMEFVKKYLKLEADXKLFLYVNQTFAPSPDQIVRNLYE 390
           + KKK+ V ++  +G     ++K ++L  +  LF +VN    P     +  LY+
Sbjct: 44  LDKKKYLVPSDLTVGQFYFLIRKRIQLRPEDALFFFVNNVI-PQTMTTMGQLYQ 96


>Z68303-6|CAD89754.1|  708|Caenorhabditis elegans Hypothetical
           protein ZK809.5b protein.
          Length = 708

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +3

Query: 63  SKMSDEKLIDETQSQSVAGMEALRIEVDNKENSDPSKSDKLKVDILLKA 209
           +K + EK  DE Q +    ME LR+E +  E +    +DK + D+ ++A
Sbjct: 189 NKENFEKCRDEWQRKMELEMEELRLERERIEVASLKSTDKRRSDMAIEA 237


>Z68303-5|CAA92639.2|  706|Caenorhabditis elegans Hypothetical
           protein ZK809.5a protein.
          Length = 706

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +3

Query: 63  SKMSDEKLIDETQSQSVAGMEALRIEVDNKENSDPSKSDKLKVDILLKA 209
           +K + EK  DE Q +    ME LR+E +  E +    +DK + D+ ++A
Sbjct: 187 NKENFEKCRDEWQRKMELEMEELRLERERIEVASLKSTDKRRSDMAIEA 235


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,455,526
Number of Sequences: 27780
Number of extensions: 262039
Number of successful extensions: 658
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)