Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_M17
(501 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q3UA25 Cluster: Bone marrow macrophage cDNA, RIKEN full... 157 1e-37
UniRef50_P62241 Cluster: 40S ribosomal protein S8; n=93; Eukaryo... 157 1e-37
UniRef50_Q8MLY8 Cluster: 40S ribosomal protein S8; n=82; Eukaryo... 135 5e-31
UniRef50_Q4N3P0 Cluster: 40S ribosomal protein S8; n=4; Eukaryot... 126 4e-28
UniRef50_Q08069 Cluster: 40S ribosomal protein S8; n=21; Eukaryo... 122 5e-27
UniRef50_P25204 Cluster: 40S ribosomal protein S8; n=19; Eukaryo... 112 4e-24
UniRef50_Q6QP50 Cluster: Putative 40S ribosomal protein S8; n=1;... 106 2e-22
UniRef50_UPI000049933B Cluster: conserved hypothetical protein; ... 98 8e-20
UniRef50_Q5JR95 Cluster: Ribosomal protein S8; n=8; Euteleostomi... 97 2e-19
UniRef50_A6RAQ0 Cluster: Ribosomal protein S8; n=1; Ajellomyces ... 93 4e-18
UniRef50_Q7R1W8 Cluster: Ribosomal protein S8; n=1; Giardia lamb... 88 1e-16
UniRef50_Q8SWC9 Cluster: Ribosomal protein S8; n=1; Encephalitoz... 77 3e-13
UniRef50_Q9AW20 Cluster: 40S ribosomal protein S8; n=1; Guillard... 73 4e-12
UniRef50_Q6L0D3 Cluster: 30S ribosomal protein S8e; n=7; Archaea... 63 4e-09
UniRef50_Q3LVX9 Cluster: Ribosomal protein S8; n=1; Bigelowiella... 58 1e-07
UniRef50_A3CSQ2 Cluster: 30S ribosomal protein S8e; n=5; Archaea... 57 2e-07
UniRef50_Q9HJD0 Cluster: 30S ribosomal protein S8e; n=5; Euryarc... 51 2e-05
UniRef50_O58830 Cluster: 30S ribosomal protein S8e; n=6; Archaea... 50 4e-05
UniRef50_Q980W3 Cluster: 30S ribosomal protein S8e; n=4; Archaea... 45 8e-04
UniRef50_Q0W1L5 Cluster: 30S ribosomal protein S8e; n=3; Euryarc... 44 0.002
UniRef50_Q8TV55 Cluster: 30S ribosomal protein S8e; n=1; Methano... 43 0.004
UniRef50_Q5C1R4 Cluster: SJCHGC03085 protein; n=1; Schistosoma j... 42 0.008
UniRef50_A0RXG5 Cluster: Ribosomal protein S8E; n=2; Thermoprote... 42 0.008
UniRef50_Q2NEU6 Cluster: 30S ribosomal protein S8e; n=1; Methano... 42 0.008
UniRef50_Q9YDY0 Cluster: 30S ribosomal protein S8e; n=3; Desulfu... 40 0.024
UniRef50_P61300 Cluster: 30S ribosomal protein S8e; n=5; Methano... 40 0.042
UniRef50_Q8ZTB8 Cluster: 30S ribosomal protein S8e; n=6; Archaea... 38 0.096
UniRef50_Q4SV68 Cluster: Chromosome undetermined SCAF13783, whol... 37 0.22
UniRef50_Q2W531 Cluster: TPR repeat; n=3; Magnetospirillum|Rep: ... 33 3.6
UniRef50_A7D873 Cluster: Exodeoxyribonuclease III Xth; n=2; Meth... 33 3.6
UniRef50_Q89D60 Cluster: Blr7583 protein; n=1; Bradyrhizobium ja... 33 4.8
UniRef50_Q2IIU4 Cluster: Putative uncharacterized protein; n=1; ... 33 4.8
UniRef50_Q1DVN4 Cluster: Putative uncharacterized protein; n=1; ... 33 4.8
UniRef50_A5E7M6 Cluster: Putative uncharacterized protein; n=1; ... 33 4.8
UniRef50_UPI0000F32D0C Cluster: Zinc finger CCCH domain-containi... 32 6.3
UniRef50_A7F1W3 Cluster: Putative uncharacterized protein; n=1; ... 32 6.3
UniRef50_Q2PC57 Cluster: Putative Hydroxylase; n=2; Streptomyces... 32 8.3
UniRef50_Q2GM87 Cluster: Putative uncharacterized protein; n=1; ... 32 8.3
>UniRef50_Q3UA25 Cluster: Bone marrow macrophage cDNA, RIKEN
full-length enriched library, clone:I830031J02
product:ribosomal protein S8, full insert sequence; n=9;
Deuterostomia|Rep: Bone marrow macrophage cDNA, RIKEN
full-length enriched library, clone:I830031J02
product:ribosomal protein S8, full insert sequence - Mus
musculus (Mouse)
Length = 152
Score = 157 bits (381), Expect = 1e-37
Identities = 71/85 (83%), Positives = 76/85 (89%)
Frame = +1
Query: 70 GKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 249
GKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRLD GNFSWGSEC TRK
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRK 75
Query: 250 TRIIDVVYNASNNELVRTKTLXQEC 324
TRIIDVVYNASNNELVRTKTL + C
Sbjct: 76 TRIIDVVYNASNNELVRTKTLVKNC 100
Score = 87.4 bits (207), Expect = 2e-16
Identities = 38/56 (67%), Positives = 45/56 (80%)
Frame = +2
Query: 305 RPLXKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTXAXEAIINKKRSQKTAXKY 472
+ L KN IV++D+TP+RQWYESHY LPLGRKKGAKLT E I+NKKRS+K KY
Sbjct: 94 KTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKY 149
Score = 34.3 bits (75), Expect = 1.6
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +3
Query: 24 MGISRDHWHKRRATG 68
MGISRD+WHKRR TG
Sbjct: 1 MGISRDNWHKRRKTG 15
>UniRef50_P62241 Cluster: 40S ribosomal protein S8; n=93;
Eukaryota|Rep: 40S ribosomal protein S8 - Homo sapiens
(Human)
Length = 208
Score = 157 bits (381), Expect = 1e-37
Identities = 71/85 (83%), Positives = 76/85 (89%)
Frame = +1
Query: 70 GKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 249
GKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRLD GNFSWGSEC TRK
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRK 75
Query: 250 TRIIDVVYNASNNELVRTKTLXQEC 324
TRIIDVVYNASNNELVRTKTL + C
Sbjct: 76 TRIIDVVYNASNNELVRTKTLVKNC 100
Score = 92.3 bits (219), Expect = 6e-18
Identities = 41/65 (63%), Positives = 51/65 (78%)
Frame = +2
Query: 305 RPLXKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTXAXEAIINKKRSQKTAXKYLARQ 484
+ L KN IV++D+TP+RQWYESHY LPLGRKKGAKLT E I+NKKRS+K KY R+
Sbjct: 94 KTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERK 153
Query: 485 RLAKV 499
+ AK+
Sbjct: 154 KNAKI 158
Score = 34.3 bits (75), Expect = 1.6
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +3
Query: 24 MGISRDHWHKRRATG 68
MGISRD+WHKRR TG
Sbjct: 1 MGISRDNWHKRRKTG 15
>UniRef50_Q8MLY8 Cluster: 40S ribosomal protein S8; n=82;
Eukaryota|Rep: 40S ribosomal protein S8 - Drosophila
melanogaster (Fruit fly)
Length = 208
Score = 135 bits (327), Expect = 5e-31
Identities = 63/81 (77%), Positives = 70/81 (86%)
Frame = +1
Query: 70 GKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 249
GKR +RKKRK+ELGRPAANT+LG R+H VR+RGGNTK RALRL+TGNF+W SE RK
Sbjct: 16 GKRKSLRKKRKFELGRPAANTKLGSGRVHKVRTRGGNTKLRALRLETGNFAWASEGVARK 75
Query: 250 TRIIDVVYNASNNELVRTKTL 312
TRI DVVYNASNNELVRTKTL
Sbjct: 76 TRIADVVYNASNNELVRTKTL 96
Score = 81.0 bits (191), Expect = 1e-14
Identities = 37/67 (55%), Positives = 47/67 (70%), Gaps = 2/67 (2%)
Frame = +2
Query: 305 RPLXKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTXAXEA--IINKKRSQKTAXKYLA 478
+ L KN+IVV+DATPFRQWYE+HY LPLGRK+ K + ++ KKRS+K KYL
Sbjct: 94 KTLVKNSIVVIDATPFRQWYEAHYVLPLGRKRNPKHAQKEDENDVLTKKRSEKVMKKYLE 153
Query: 479 RQRLAKV 499
RQ+ KV
Sbjct: 154 RQKYGKV 160
>UniRef50_Q4N3P0 Cluster: 40S ribosomal protein S8; n=4;
Eukaryota|Rep: 40S ribosomal protein S8 - Theileria
parva
Length = 188
Score = 126 bits (303), Expect = 4e-28
Identities = 58/82 (70%), Positives = 71/82 (86%), Gaps = 1/82 (1%)
Frame = +1
Query: 70 GKRAPI-RKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTR 246
G R P+ +KKRKYELGRP++NT+LG + + VR RGGN K+RALRLD+GNFSWGS+ TR
Sbjct: 15 GGRYPVHKKKRKYELGRPSSNTKLGSKLVRKVRCRGGNLKFRALRLDSGNFSWGSQNVTR 74
Query: 247 KTRIIDVVYNASNNELVRTKTL 312
KTR++DVVYNAS+NELVRTKTL
Sbjct: 75 KTRVMDVVYNASSNELVRTKTL 96
Score = 45.6 bits (103), Expect = 6e-04
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Frame = +2
Query: 218 SLGDRNVQLAKPVSLMLCIMHLTMNWCVQ-RPLXKNAIVVVDATPFRQWYESHYTLPLGR 394
S G +NV + +M + + + N V+ + L KNAIV VD TPF+ W+++HY L LG+
Sbjct: 66 SWGSQNV--TRKTRVMDVVYNASSNELVRTKTLVKNAIVTVDPTPFKLWFKTHYGLELGK 123
>UniRef50_Q08069 Cluster: 40S ribosomal protein S8; n=21;
Eukaryota|Rep: 40S ribosomal protein S8 - Zea mays
(Maize)
Length = 221
Score = 122 bits (294), Expect = 5e-27
Identities = 59/82 (71%), Positives = 67/82 (81%), Gaps = 1/82 (1%)
Frame = +1
Query: 70 GKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTGNFSWGSECSTR 246
GK+ RKKRKYELGR ANT+L + + VR RGGN K+RALRLDTGN+SWGSE TR
Sbjct: 16 GKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDTGNYSWGSEAVTR 75
Query: 247 KTRIIDVVYNASNNELVRTKTL 312
KTRI+DVVYNASNNELVRT+TL
Sbjct: 76 KTRILDVVYNASNNELVRTQTL 97
Score = 46.4 bits (105), Expect = 4e-04
Identities = 19/30 (63%), Positives = 24/30 (80%)
Frame = +2
Query: 311 LXKNAIVVVDATPFRQWYESHYTLPLGRKK 400
L K+AIV VDA PF+QWY +HY + +GRKK
Sbjct: 97 LVKSAIVQVDAAPFKQWYLTHYGVDIGRKK 126
>UniRef50_P25204 Cluster: 40S ribosomal protein S8; n=19;
Eukaryota|Rep: 40S ribosomal protein S8 - Leishmania
major
Length = 220
Score = 112 bits (270), Expect = 4e-24
Identities = 53/85 (62%), Positives = 64/85 (75%)
Frame = +1
Query: 70 GKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 249
GK RK+ K ELGR ANTRLG +R+ VR+RGGN K RALRLDTGNF+W SE +
Sbjct: 16 GKTKIHRKRMKAELGRLPANTRLGARRVSPVRARGGNFKIRALRLDTGNFAWASEAIAHR 75
Query: 250 TRIIDVVYNASNNELVRTKTLXQEC 324
R++DVVYNA++NELVRTKTL + C
Sbjct: 76 VRLLDVVYNATSNELVRTKTLVKNC 100
Score = 49.2 bits (112), Expect = 5e-05
Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Frame = +2
Query: 242 LAKPVSLMLCIMHLTMNWCVQ-RPLXKNAIVVVDATPFRQWYESHYTLPL-GRKKGAKLT 415
+A V L+ + + T N V+ + L KN IV VDA PF++WY HY + L KK K
Sbjct: 72 IAHRVRLLDVVYNATSNELVRTKTLVKNCIVAVDAAPFKRWYAKHYGIDLDADKKSTKAA 131
Query: 416 XAXEAIINKKRSQKTAXKY 472
A E +K + A KY
Sbjct: 132 VAAEK-KGRKSAHAAADKY 149
>UniRef50_Q6QP50 Cluster: Putative 40S ribosomal protein S8; n=1;
Zea mays|Rep: Putative 40S ribosomal protein S8 - Zea
mays (Maize)
Length = 245
Score = 106 bits (255), Expect = 2e-22
Identities = 51/82 (62%), Positives = 64/82 (78%), Gaps = 1/82 (1%)
Frame = +1
Query: 70 GKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTGNFSWGSECSTR 246
G P+++++ YELGR ANT+L + + VR RGGNTK+RALR DT N+SWGSE TR
Sbjct: 113 GPFCPLQEEQGYELGRQPANTKLSSNKTVRRVRVRGGNTKWRALRFDTCNYSWGSEALTR 172
Query: 247 KTRIIDVVYNASNNELVRTKTL 312
KTRI+DVVY A+NNELVRT+TL
Sbjct: 173 KTRILDVVYIATNNELVRTQTL 194
Score = 46.4 bits (105), Expect = 4e-04
Identities = 19/30 (63%), Positives = 24/30 (80%)
Frame = +2
Query: 311 LXKNAIVVVDATPFRQWYESHYTLPLGRKK 400
L K+AIV VDA PF+QWY +HY + +GRKK
Sbjct: 194 LVKSAIVQVDAAPFKQWYLTHYGVDIGRKK 223
>UniRef50_UPI000049933B Cluster: conserved hypothetical protein;
n=3; Entamoeba histolytica HM-1:IMSS|Rep: conserved
hypothetical protein - Entamoeba histolytica HM-1:IMSS
Length = 237
Score = 98.3 bits (234), Expect = 8e-20
Identities = 46/81 (56%), Positives = 60/81 (74%)
Frame = +1
Query: 70 GKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 249
GK+ ++KK+K +GR ANTRLG R+H VR R G K RALRL+ GNFSW S+ T+
Sbjct: 16 GKKNSMQKKKKNTMGRQPANTRLGAIRVHDVRCRYGIIKRRALRLENGNFSWASQSITKG 75
Query: 250 TRIIDVVYNASNNELVRTKTL 312
T+I++VVYNAS+N+ VRT TL
Sbjct: 76 TKILNVVYNASDNDFVRTNTL 96
>UniRef50_Q5JR95 Cluster: Ribosomal protein S8; n=8;
Euteleostomi|Rep: Ribosomal protein S8 - Homo sapiens
(Human)
Length = 188
Score = 97.1 bits (231), Expect = 2e-19
Identities = 54/85 (63%), Positives = 59/85 (69%)
Frame = +1
Query: 70 GKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 249
GKR P KKRKYELGRPAANT++GP+RIH+VR RGG C TRK
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGG-------------------C-TRK 55
Query: 250 TRIIDVVYNASNNELVRTKTLXQEC 324
TRIIDVVYNASNNELVRTKTL + C
Sbjct: 56 TRIIDVVYNASNNELVRTKTLVKNC 80
Score = 92.3 bits (219), Expect = 6e-18
Identities = 41/65 (63%), Positives = 51/65 (78%)
Frame = +2
Query: 305 RPLXKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTXAXEAIINKKRSQKTAXKYLARQ 484
+ L KN IV++D+TP+RQWYESHY LPLGRKKGAKLT E I+NKKRS+K KY R+
Sbjct: 74 KTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERK 133
Query: 485 RLAKV 499
+ AK+
Sbjct: 134 KNAKI 138
Score = 34.3 bits (75), Expect = 1.6
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +3
Query: 24 MGISRDHWHKRRATG 68
MGISRD+WHKRR TG
Sbjct: 1 MGISRDNWHKRRKTG 15
>UniRef50_A6RAQ0 Cluster: Ribosomal protein S8; n=1; Ajellomyces
capsulatus NAm1|Rep: Ribosomal protein S8 - Ajellomyces
capsulatus NAm1
Length = 141
Score = 92.7 bits (220), Expect = 4e-18
Identities = 42/65 (64%), Positives = 51/65 (78%)
Frame = +1
Query: 73 KRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKT 252
KR+ RKKR +E GR ANTR+GP+RIH VR+RGGN K+R LRL++GNFSWGSE RK
Sbjct: 17 KRSHYRKKRAFEKGRQPANTRIGPKRIHLVRTRGGNQKFRGLRLESGNFSWGSEGIARKV 76
Query: 253 RIIDV 267
R+I V
Sbjct: 77 RVIVV 81
>UniRef50_Q7R1W8 Cluster: Ribosomal protein S8; n=1; Giardia lamblia
ATCC 50803|Rep: Ribosomal protein S8 - Giardia lamblia
ATCC 50803
Length = 174
Score = 87.8 bits (208), Expect = 1e-16
Identities = 46/87 (52%), Positives = 58/87 (66%), Gaps = 9/87 (10%)
Frame = +1
Query: 91 KKRKYELGRPAANTRL---------GPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECST 243
KKRKY LGR ANT+L Q+I ++R RGGN K RALRL G+F+WGS +
Sbjct: 23 KKRKYNLGRQPANTKLIVKVTSKKNEGQKISTIRCRGGNIKRRALRLSHGSFAWGSADIS 82
Query: 244 RKTRIIDVVYNASNNELVRTKTLXQEC 324
K RI+ VVYN+++NELVRT TL + C
Sbjct: 83 HKARILQVVYNSTSNELVRTNTLVKGC 109
>UniRef50_Q8SWC9 Cluster: Ribosomal protein S8; n=1; Encephalitozoon
cuniculi|Rep: Ribosomal protein S8 - Encephalitozoon
cuniculi
Length = 173
Score = 76.6 bits (180), Expect = 3e-13
Identities = 38/84 (45%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Frame = +1
Query: 70 GKRAPI-RKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTR 246
G +A I RKKR G ++T++G +++ VR RGGN KY+ALRLD G+F + + R
Sbjct: 15 GAKAVISRKKRNNRAGSQPSSTKIGERKVTPVRVRGGNRKYKALRLDMGHFKFITTGKFR 74
Query: 247 KTRIIDVVYNASNNELVRTKTLXQ 318
+++ VVY+ S+NELVRT TL +
Sbjct: 75 MAKLLQVVYHPSSNELVRTNTLTK 98
>UniRef50_Q9AW20 Cluster: 40S ribosomal protein S8; n=1; Guillardia
theta|Rep: 40S ribosomal protein S8 - Guillardia theta
(Cryptomonas phi)
Length = 178
Score = 72.9 bits (171), Expect = 4e-12
Identities = 38/83 (45%), Positives = 53/83 (63%)
Frame = +1
Query: 70 GKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 249
G ++ RKKR + GR +NT++G + + +R RGG K RAL L GNFS+ S T K
Sbjct: 16 GLKSCWRKKRNHAKGRQPSNTKIGRRCVVKLRVRGGGVKTRALFLSYGNFSFVSIQRTFK 75
Query: 250 TRIIDVVYNASNNELVRTKTLXQ 318
+I+ V +N S+NELVRT TL +
Sbjct: 76 AKILSVAFNESSNELVRTNTLTK 98
>UniRef50_Q6L0D3 Cluster: 30S ribosomal protein S8e; n=7;
Archaea|Rep: 30S ribosomal protein S8e - Picrophilus
torridus
Length = 125
Score = 62.9 bits (146), Expect = 4e-09
Identities = 32/80 (40%), Positives = 45/80 (56%)
Frame = +1
Query: 61 PPAGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECS 240
P GK P KR+YELGR TRLG + + +RS GGN+K+ LR D N + +
Sbjct: 12 PSGGKLRPNHSKRRYELGREPTLTRLGDRELRKIRSYGGNSKFALLRCDYANVYNPKDKT 71
Query: 241 TRKTRIIDVVYNASNNELVR 300
TRK +I V N+++ V+
Sbjct: 72 TRKVKINTVKENSADPHYVQ 91
>UniRef50_Q3LVX9 Cluster: Ribosomal protein S8; n=1; Bigelowiella
natans|Rep: Ribosomal protein S8 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 176
Score = 57.6 bits (133), Expect = 1e-07
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Frame = +1
Query: 70 GKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTGNFSWGSECSTR 246
GK+ I KK+ + G NT L I R RGGN K++A+ L G+F W + ++
Sbjct: 9 GKKKKISKKKNHSKGNNPTNTVLRRANFIKMTRVRGGNFKFKAISLGKGSFQWKTMQLSK 68
Query: 247 KTRIIDVVYNASNNELVRTKTLXQ 318
++I+ V+YN +N +LV+ + L +
Sbjct: 69 NSKILSVLYNQANLKLVQKRNLSK 92
>UniRef50_A3CSQ2 Cluster: 30S ribosomal protein S8e; n=5;
Archaea|Rep: 30S ribosomal protein S8e - Methanoculleus
marisnigri (strain ATCC 35101 / DSM 1498 / JR1)
Length = 125
Score = 57.2 bits (132), Expect = 2e-07
Identities = 32/86 (37%), Positives = 48/86 (55%)
Frame = +1
Query: 61 PPAGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECS 240
P G+ + K++ E+GR A T +G +R VR+ GGN K RALRL+ S +
Sbjct: 11 PSGGRYHTSQGKKRTEIGRAPAETHIGEERRRIVRTFGGNQKVRALRLEYATVSNPATGE 70
Query: 241 TRKTRIIDVVYNASNNELVRTKTLXQ 318
T+KT+I V N+++ VR K L +
Sbjct: 71 TKKTKIEAVEANSADPNYVRRKLLTK 96
>UniRef50_Q9HJD0 Cluster: 30S ribosomal protein S8e; n=5;
Euryarchaeota|Rep: 30S ribosomal protein S8e -
Thermoplasma acidophilum
Length = 127
Score = 50.8 bits (116), Expect = 2e-05
Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Frame = +1
Query: 88 RKKRKYELGRPAANTRLGPQRIHSV-RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIID 264
RKKR++ELGR T+LG + V R+ GGNTK +T N SE +K +II
Sbjct: 21 RKKRRFELGREPTLTKLGTKTERKVIRTMGGNTKVILFTAETANVYDASEKKIKKAKIIT 80
Query: 265 VVYNASNNELVR 300
V N +N+ V+
Sbjct: 81 VKANPANSHYVQ 92
>UniRef50_O58830 Cluster: 30S ribosomal protein S8e; n=6;
Archaea|Rep: 30S ribosomal protein S8e - Pyrococcus
horikoshii
Length = 127
Score = 49.6 bits (113), Expect = 4e-05
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Frame = +1
Query: 61 PPAGKRAPIRKKRKYELGRPAANTRLGPQ-RIHSVRSRGGNTKYRALRLDTGNFSWGSEC 237
P G+ RKKRK ELGR +NTR+ Q + +R+ GGN K R N +
Sbjct: 12 PSGGRIVLARKKRKRELGREPSNTRVAEQDKRKIIRTYGGNRKVRLTAAAYANV-FDKSG 70
Query: 238 STRKTRIIDVVYNASNNELVRTKTLXQ 318
RK RII V+ N +N + R + +
Sbjct: 71 KGRKVRIIRVLENPANRQFARRNIITK 97
>UniRef50_Q980W3 Cluster: 30S ribosomal protein S8e; n=4;
Archaea|Rep: 30S ribosomal protein S8e - Sulfolobus
solfataricus
Length = 133
Score = 45.2 bits (102), Expect = 8e-04
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = +1
Query: 70 GKRAPIRKKRKYELGRPAANTRLGPQRIH-SVRSRGGNTKYRALRLDTGNFSWGSECSTR 246
G + R KRKYE+G P T L + I R+ GGN K R T N + + +
Sbjct: 15 GLKGKHRDKRKYEIGNPPTFTTLSAEDIRIKDRTLGGNFKVRLKYTTTANVLDPATNTAK 74
Query: 247 KTRIIDVVYNASNNELVR 300
K +I++++ +N EL R
Sbjct: 75 KVKILEILETPANKELAR 92
>UniRef50_Q0W1L5 Cluster: 30S ribosomal protein S8e; n=3;
Euryarchaeota|Rep: 30S ribosomal protein S8e -
Uncultured methanogenic archaeon RC-I
Length = 125
Score = 44.0 bits (99), Expect = 0.002
Identities = 24/77 (31%), Positives = 37/77 (48%)
Frame = +1
Query: 88 RKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDV 267
R KRK+ELGR +G Q++ + G +K R L+ D N + T+K ++ V
Sbjct: 20 RSKRKFELGRDFTIPVIGAQKLKVLNVTGNGSKVRVLKSDVVNVTDPKTGKTQKVKMTTV 79
Query: 268 VYNASNNELVRTKTLXQ 318
N +N VR L +
Sbjct: 80 TENPANKNYVRRNFLTK 96
>UniRef50_Q8TV55 Cluster: 30S ribosomal protein S8e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S8e -
Methanopyrus kandleri
Length = 133
Score = 42.7 bits (96), Expect = 0.004
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Frame = +1
Query: 61 PPAGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDT-GNFSWGSE 234
P G+ P RKKRK+E+G P T +G +R + R GGN K + L+ T N +
Sbjct: 12 PTGGRIRPHRKKRKFEMGNPPTETLVGEERKLKERRGMGGNVK-KGLKFATHANVADPET 70
Query: 235 CSTRKTRIIDVVYNASN 285
+ RI +VV N ++
Sbjct: 71 GEVKCVRIEEVVKNPAS 87
>UniRef50_Q5C1R4 Cluster: SJCHGC03085 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC03085 protein - Schistosoma
japonicum (Blood fluke)
Length = 120
Score = 41.9 bits (94), Expect = 0.008
Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Frame = +2
Query: 317 KNAIVVVDATPFRQWYESHYTLPLGR-----KKGAKLT--XAXEAIINKKRSQKTAXKYL 475
K+AIV + PFRQW+E+ Y LG KKG +T E + KKRS+ K+
Sbjct: 1 KSAIVQIGGAPFRQWFEAPYLKELGPPKVVCKKGPSVTPENPEEDFLLKKRSKSALKKFE 60
Query: 476 ARQRL 490
RQ L
Sbjct: 61 TRQAL 65
>UniRef50_A0RXG5 Cluster: Ribosomal protein S8E; n=2;
Thermoprotei|Rep: Ribosomal protein S8E - Cenarchaeum
symbiosum
Length = 129
Score = 41.9 bits (94), Expect = 0.008
Identities = 24/77 (31%), Positives = 39/77 (50%)
Frame = +1
Query: 70 GKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 249
G+R P+R +RKYE+ R G Q + + RG TK +D N + +K
Sbjct: 16 GRRHPLRTRRKYEIDRYPNEALSGAQETVTRKVRGKRTKTALKTIDFVNLA-VQGAKVKK 74
Query: 250 TRIIDVVYNASNNELVR 300
++I+ V+ N +NN+ R
Sbjct: 75 SKIVKVLENPTNNDYRR 91
>UniRef50_Q2NEU6 Cluster: 30S ribosomal protein S8e; n=1;
Methanosphaera stadtmanae DSM 3091|Rep: 30S ribosomal
protein S8e - Methanosphaera stadtmanae (strain DSM
3091)
Length = 126
Score = 41.9 bits (94), Expect = 0.008
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Frame = +1
Query: 46 GISEGPPAGKRAPIRK-KRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFS 222
G S P+G R+ K KR E GR A TR+G + + +RG TK RA N
Sbjct: 6 GSSLRKPSGARSRRNKNKRNAEFGRNPAETRIGDEVKKEIVARGNCTKTRATVAKRINVI 65
Query: 223 WGSECSTRKTRIIDVVYNASNNELVRTKTLXQ 318
+ S++ ++ V+ N +N+ VR + +
Sbjct: 66 DPKDNSSKNVEMLTVLENGANSHFVRRNIITK 97
>UniRef50_Q9YDY0 Cluster: 30S ribosomal protein S8e; n=3;
Desulfurococcales|Rep: 30S ribosomal protein S8e -
Aeropyrum pernix
Length = 136
Score = 40.3 bits (90), Expect = 0.024
Identities = 29/84 (34%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Frame = +1
Query: 61 PPAGKRAPIRK-KRKYELGRPAANTRLG---PQRIHSVRSRGGNTKYRALRLDTGNFSWG 228
P GKR K KRKY GRP T L + VR+RGG+ K +A ++ S
Sbjct: 12 PSGGKRRYYYKVKRKYAAGRPPTYTTLSAAEEEERKPVRARGGSYKIKAKKVAFAVVSNP 71
Query: 229 SECSTRKTRIIDVVYNASNNELVR 300
RK RI+ +V ++ E R
Sbjct: 72 KTGEARKARILRIVETPAHREYAR 95
>UniRef50_P61300 Cluster: 30S ribosomal protein S8e; n=5;
Methanococcus|Rep: 30S ribosomal protein S8e -
Methanococcus maripaludis
Length = 128
Score = 39.5 bits (88), Expect = 0.042
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = +1
Query: 91 KKRKYELGRPAANTRLGPQ-RIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDV 267
KK K E+GRPAA T++ + + VR RG N K + + + N + +K + +V
Sbjct: 22 KKHKREMGRPAAETQVSDKIKRKIVRCRGANLKVKLEKTNYANVFDQANKVCKKVVVTNV 81
Query: 268 VYNASNNELVRTKTLXQ 318
+ N +N +R + +
Sbjct: 82 IDNKANKHYIRRNVMTK 98
>UniRef50_Q8ZTB8 Cluster: 30S ribosomal protein S8e; n=6;
Archaea|Rep: 30S ribosomal protein S8e - Pyrobaculum
aerophilum
Length = 131
Score = 38.3 bits (85), Expect = 0.096
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Frame = +1
Query: 61 PPAGKRAPIRKKRKYEL-GRPAANTRLGPQRIHSV-RSRGGNTKYRALRLDTGNFSWGSE 234
P GK+ +RK +K L G P +LG V R RGGN K R N E
Sbjct: 15 PSGGKKRKVRKTKKKALGGGPPQIPKLGENDTRIVERVRGGNLKVRLREAKFANVYIPKE 74
Query: 235 CSTRKTRIIDVVYNASNNELVR 300
+ K +II ++ +N + R
Sbjct: 75 RKSVKAKIISIISTPANPDFAR 96
>UniRef50_Q4SV68 Cluster: Chromosome undetermined SCAF13783, whole
genome shotgun sequence; n=2; Coelomata|Rep: Chromosome
undetermined SCAF13783, whole genome shotgun sequence -
Tetraodon nigroviridis (Green puffer)
Length = 149
Score = 37.1 bits (82), Expect = 0.22
Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Frame = +2
Query: 215 TSLGDRNVQLAKPVSLMLCIMHLTMNWCVQRPLXKNAIVVVDATPFRQWYESHYTLPLGR 394
TS G N +P S M M TM+W R + ++ A L LG
Sbjct: 4 TSHGALNAAPERPGSSMWSTMPPTMSWLEPRHWSRTVSSLLTACLLDSGMRPIMPLLLGA 63
Query: 395 KKGAK-LTXAXEAIINKKRSQKTAXKY 472
++ T E ++NKKRS+KT KY
Sbjct: 64 RRAPSWYTPEEEEVLNKKRSKKTQKKY 90
>UniRef50_Q2W531 Cluster: TPR repeat; n=3; Magnetospirillum|Rep: TPR
repeat - Magnetospirillum magneticum (strain AMB-1 /
ATCC 700264)
Length = 556
Score = 33.1 bits (72), Expect = 3.6
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +1
Query: 73 KRAPIRKKRKYELGRPAANTRLGPQRIHSVRSR 171
+RAP K YE R AA TRL P + ++R R
Sbjct: 272 ERAPANLKANYEKERDAAGTRLSPAELEALRGR 304
>UniRef50_A7D873 Cluster: Exodeoxyribonuclease III Xth; n=2;
Methylobacterium extorquens PA1|Rep:
Exodeoxyribonuclease III Xth - Methylobacterium
extorquens PA1
Length = 344
Score = 33.1 bits (72), Expect = 3.6
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = +1
Query: 40 ITGISEGPPAGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL-DTGN 216
+ G+ G AG+R P+R++ + E RP A+ R P H+ R+R G R L + +
Sbjct: 2 VDGLCRGL-AGRRGPLRRRGRRERLRPLADDR-RPALRHAARARPGGGGGRGLTVCEARR 59
Query: 217 FSWGSECSTRKTRIIDV 267
F + S S ++ I V
Sbjct: 60 FRYRSGSSRHASQAIPV 76
>UniRef50_Q89D60 Cluster: Blr7583 protein; n=1; Bradyrhizobium
japonicum|Rep: Blr7583 protein - Bradyrhizobium
japonicum
Length = 261
Score = 32.7 bits (71), Expect = 4.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 326 IVVVDATPFRQWYESHYTLPLGRKK 400
++ +D PFR+W + TLPLG K
Sbjct: 22 VIAIDGDPFREWQRTSRTLPLGEVK 46
>UniRef50_Q2IIU4 Cluster: Putative uncharacterized protein; n=1;
Anaeromyxobacter dehalogenans 2CP-C|Rep: Putative
uncharacterized protein - Anaeromyxobacter dehalogenans
(strain 2CP-C)
Length = 121
Score = 32.7 bits (71), Expect = 4.8
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +1
Query: 28 VLVGITGISEGPPAGKRAPIRKKRKYELGRPAANTRLGPQRI-HSVR 165
VL + +S A K A IRK+ +Y GR A TRL P H +R
Sbjct: 63 VLPDVGKLSRSDAAAKAAEIRKRPEYFTGRRADGTRLAPDEYEHLIR 109
>UniRef50_Q1DVN4 Cluster: Putative uncharacterized protein; n=1;
Coccidioides immitis|Rep: Putative uncharacterized
protein - Coccidioides immitis
Length = 684
Score = 32.7 bits (71), Expect = 4.8
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Frame = +1
Query: 55 EGPPAGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNT---KYRALRLDTGNFSW 225
+GP + K AP+ + +++LGRP+A L P G + K A DTGN +
Sbjct: 489 QGPYSSKAAPLLPQFEFDLGRPSA--LLDPPGADYDNPPWGTSCQCKEDANHFDTGNTAE 546
Query: 226 GSECSTRKTRIIDVVYNASNNELVRTK 306
S +T+ I A+ ++++ K
Sbjct: 547 SSHSNTKAENIPGQTARAATGKILKRK 573
>UniRef50_A5E7M6 Cluster: Putative uncharacterized protein; n=1;
Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
uncharacterized protein - Lodderomyces elongisporus
(Yeast) (Saccharomyces elongisporus)
Length = 620
Score = 32.7 bits (71), Expect = 4.8
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +2
Query: 257 SLMLCIMHLTMNWCVQRPLXKNAIVVVD-ATPFRQWYESHYTLPLGRKKGAKL 412
S + + + W ++ P + D ATPF Q + +HY L RKKG K+
Sbjct: 345 STQVSLQKILYLWAIRHPASGYVQGINDLATPFYQTFLAHYIWQLKRKKGKKM 397
>UniRef50_UPI0000F32D0C Cluster: Zinc finger CCCH domain-containing
protein 6.; n=1; Bos taurus|Rep: Zinc finger CCCH
domain-containing protein 6. - Bos Taurus
Length = 770
Score = 32.3 bits (70), Expect = 6.3
Identities = 16/26 (61%), Positives = 19/26 (73%)
Frame = +2
Query: 71 GNVRPYARRGSMS*GVPLQTPGSVLS 148
G + PYA + S S G+PL TPGSVLS
Sbjct: 604 GALPPYAPKLSSSTGLPLGTPGSVLS 629
>UniRef50_A7F1W3 Cluster: Putative uncharacterized protein; n=1;
Sclerotinia sclerotiorum 1980|Rep: Putative
uncharacterized protein - Sclerotinia sclerotiorum 1980
Length = 622
Score = 32.3 bits (70), Expect = 6.3
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 293 NSLLDALYTTSMIRVLRVEHSDPQEKLPVS 204
N L D +Y T I +R EH DP++ LP S
Sbjct: 309 NLLFDTIYATPPIARVRSEHEDPRDNLPDS 338
>UniRef50_Q2PC57 Cluster: Putative Hydroxylase; n=2; Streptomyces
achromogenes subsp. rubradiris|Rep: Putative Hydroxylase
- Streptomyces achromogenes subsp. rubradiris
Length = 270
Score = 31.9 bits (69), Expect = 8.3
Identities = 20/67 (29%), Positives = 29/67 (43%)
Frame = +2
Query: 173 VEILSTVRCVWTPVTSLGDRNVQLAKPVSLMLCIMHLTMNWCVQRPLXKNAIVVVDATPF 352
+E+++ V V L + + P + + L N CV P + I V A PF
Sbjct: 200 IEVIAAVTGRPIEVVDLDPEDAEPKLPEFFIRIMTELMNNPCVVTPAVEE-ITGVPARPF 258
Query: 353 RQWYESH 373
RQW E H
Sbjct: 259 RQWAEDH 265
>UniRef50_Q2GM87 Cluster: Putative uncharacterized protein; n=1;
Chaetomium globosum|Rep: Putative uncharacterized
protein - Chaetomium globosum (Soil fungus)
Length = 541
Score = 31.9 bits (69), Expect = 8.3
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = +2
Query: 38 GSLA*AKGHRLGNVRPYARRGSMS*GVPLQTPGSVLSVSTP 160
G A A GH ++ PYA RG + PG + SVSTP
Sbjct: 112 GGSAWAAGHGPLSIAPYAARGFAAAATDAGLPGDLASVSTP 152
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 508,596,614
Number of Sequences: 1657284
Number of extensions: 10447023
Number of successful extensions: 26715
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 26051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26706
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 29691847201
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -