Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_M17
(501 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha... 125 3e-30
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar... 125 3e-30
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|... 29 0.30
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 27 1.6
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 27 1.6
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 25 4.8
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr... 25 6.4
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 25 6.4
>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 125 bits (302), Expect = 3e-30
Identities = 58/80 (72%), Positives = 67/80 (83%)
Frame = +1
Query: 73 KRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKT 252
KRA RKKRK+ELGR +NTR+GP+RIH VR RGGN K+RALRLD+GNFSWGSE ++KT
Sbjct: 17 KRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRLDSGNFSWGSEGVSKKT 76
Query: 253 RIIDVVYNASNNELVRTKTL 312
RII V Y+ SNNELVRT TL
Sbjct: 77 RIIQVAYHPSNNELVRTNTL 96
Score = 45.2 bits (102), Expect = 6e-06
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Frame = +2
Query: 242 LAKPVSLMLCIMHLTMNWCVQ-RPLXKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLT 415
++K ++ H + N V+ L K+AIV +DA PFR WYE+HY + +G KG K T
Sbjct: 72 VSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYGILMG-SKGKKAT 129
Score = 26.2 bits (55), Expect = 2.8
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +3
Query: 24 MGISRDHWHKRRATG 68
MGI+RD HKR ATG
Sbjct: 1 MGITRDSRHKRSATG 15
>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 125 bits (302), Expect = 3e-30
Identities = 58/80 (72%), Positives = 67/80 (83%)
Frame = +1
Query: 73 KRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKT 252
KRA RKKRK+ELGR +NTR+GP+RIH VR RGGN K+RALRLD+GNFSWGSE ++KT
Sbjct: 17 KRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRLDSGNFSWGSEGVSKKT 76
Query: 253 RIIDVVYNASNNELVRTKTL 312
RII V Y+ SNNELVRT TL
Sbjct: 77 RIIQVAYHPSNNELVRTNTL 96
Score = 45.2 bits (102), Expect = 6e-06
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Frame = +2
Query: 242 LAKPVSLMLCIMHLTMNWCVQ-RPLXKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLT 415
++K ++ H + N V+ L K+AIV +DA PFR WYE+HY + +G KG K T
Sbjct: 72 VSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYGILMG-SKGKKAT 129
Score = 26.2 bits (55), Expect = 2.8
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +3
Query: 24 MGISRDHWHKRRATG 68
MGI+RD HKR ATG
Sbjct: 1 MGITRDSRHKRSATG 15
>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 207
Score = 29.5 bits (63), Expect = 0.30
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +1
Query: 52 SEGPPAGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALR 201
S+G K+ +KRK L R A RL + + S+ S+GG +A +
Sbjct: 35 SKGVKTNKKEQEAEKRKAALERKAERERLEKEEMESLPSKGGKGSKKAAK 84
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 27.1 bits (57), Expect = 1.6
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -2
Query: 89 RMGARFPAGGPSLMPVIPTNTHLSWVEKR 3
RM F L+PVI T THLS VE +
Sbjct: 1196 RMSVDFSEKYTQLIPVITTYTHLSEVENK 1224
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 27.1 bits (57), Expect = 1.6
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +1
Query: 106 ELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRI 258
EL +N + Q+ + S T YRA+ LDTG+ E + K RI
Sbjct: 1108 ELASSKSNITIRWQQGGLIGSGSFGTVYRAVNLDTGDLMAVKEVALHKPRI 1158
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 25.4 bits (53), Expect = 4.8
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 284 LDALYTTSMIRVLRVEHSDPQEKLPVSRR 198
L+ + T S +V R H DP KLP RR
Sbjct: 193 LEGVKTKSGRKVHRPNHFDPLVKLPTRRR 221
>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1225
Score = 25.0 bits (52), Expect = 6.4
Identities = 11/43 (25%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +2
Query: 332 VVDATPFRQWYESHYTLPLGRKKGA---KLTXAXEAIINKKRS 451
V+D +Q +++Y +PL K+G ++T + + ++ KR+
Sbjct: 1121 VIDCKLLQQQQQTNYEIPLDSKQGVLYLRITLSPKWVLRSKRA 1163
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 25.0 bits (52), Expect = 6.4
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 131 PGSVLSVSTPFVHVVEILSTVRCVWTPVTSLG 226
P VLS P++ + L + C+W P LG
Sbjct: 682 PILVLSTMKPYLCNITFLGSHLCIWQPKILLG 713
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,060,986
Number of Sequences: 5004
Number of extensions: 42078
Number of successful extensions: 101
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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