Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_M17
(501 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0270 + 17135464-17135467,17135583-17135655,17136253-171365... 122 2e-28
04_03_0510 - 16659486-16659564,16659772-16659947,16660464-166607... 122 2e-28
07_01_0467 - 3524598-3524837,3524939-3525466,3526242-3526892,352... 33 0.13
01_02_0013 + 10162478-10163581 29 1.6
04_03_0867 - 20414999-20415160,20415255-20415384,20415515-204157... 29 2.8
03_01_0350 - 2753217-2754152 29 2.8
08_01_0892 - 8778097-8778236,8778390-8778486,8778568-8778747,877... 28 3.7
03_05_0936 - 28955486-28955683,28956320-28956424,28956550-289566... 28 3.7
03_01_0161 + 1307206-1307769,1307979-1308101,1308182-1308286,130... 27 6.4
07_01_0556 - 4136000-4136608 27 8.5
07_01_0251 + 1874148-1874311,1874367-1874429,1874484-1874709,187... 27 8.5
03_06_0019 - 31078669-31080081 27 8.5
01_05_0361 + 21377080-21377281,21378619-21378705,21379862-213801... 27 8.5
>02_03_0270 +
17135464-17135467,17135583-17135655,17136253-17136583,
17136916-17136969,17137219-17137394,17137607-17137685
Length = 238
Score = 122 bits (294), Expect = 2e-28
Identities = 59/82 (71%), Positives = 67/82 (81%), Gaps = 1/82 (1%)
Frame = +1
Query: 70 GKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTGNFSWGSECSTR 246
GK+ RKKRKYELGR ANT+L + + VR RGGN K+RALRLDTGN+SWGSE TR
Sbjct: 16 GKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDTGNYSWGSEAVTR 75
Query: 247 KTRIIDVVYNASNNELVRTKTL 312
KTRI+DVVYNASNNELVRT+TL
Sbjct: 76 KTRILDVVYNASNNELVRTQTL 97
Score = 47.2 bits (107), Expect = 7e-06
Identities = 20/32 (62%), Positives = 25/32 (78%)
Frame = +2
Query: 311 LXKNAIVVVDATPFRQWYESHYTLPLGRKKGA 406
L K+AIV VDA PF+QWY +HY + +GRKK A
Sbjct: 97 LVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKA 128
Score = 30.7 bits (66), Expect = 0.69
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = +3
Query: 24 MGISRDHWHKRRATG 68
MGISRD HKRRATG
Sbjct: 1 MGISRDSMHKRRATG 15
>04_03_0510 -
16659486-16659564,16659772-16659947,16660464-16660797,
16661564-16661636,16661780-16661783
Length = 221
Score = 122 bits (293), Expect = 2e-28
Identities = 59/82 (71%), Positives = 67/82 (81%), Gaps = 1/82 (1%)
Frame = +1
Query: 70 GKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTGNFSWGSECSTR 246
GK+ RKKRKYELGR ANT+L + + VR RGGN K+RALRLDTGN+SWGSE TR
Sbjct: 16 GKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNLKWRALRLDTGNYSWGSEAVTR 75
Query: 247 KTRIIDVVYNASNNELVRTKTL 312
KTRI+DVVYNASNNELVRT+TL
Sbjct: 76 KTRILDVVYNASNNELVRTQTL 97
Score = 47.2 bits (107), Expect = 7e-06
Identities = 20/32 (62%), Positives = 25/32 (78%)
Frame = +2
Query: 311 LXKNAIVVVDATPFRQWYESHYTLPLGRKKGA 406
L K+AIV VDA PF+QWY +HY + +GRKK A
Sbjct: 97 LVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKA 128
Score = 30.7 bits (66), Expect = 0.69
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = +3
Query: 24 MGISRDHWHKRRATG 68
MGISRD HKRRATG
Sbjct: 1 MGISRDSMHKRRATG 15
>07_01_0467 -
3524598-3524837,3524939-3525466,3526242-3526892,
3527015-3527500,3527580-3527792,3527885-3528174,
3528276-3528418,3528633-3528855,3528983-3529160,
3529598-3529867
Length = 1073
Score = 33.1 bits (72), Expect = 0.13
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Frame = +1
Query: 67 AGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSR----GGNTKYRALRLDTGN-FSWGS 231
AG+ R+ +LG P+ +T+ P+R+ S+++R K+ A DTG F+WGS
Sbjct: 261 AGELFTWGSNREGQLGYPSVDTQPTPRRVSSLKARIISVAAANKHSAAVADTGEVFTWGS 320
>01_02_0013 + 10162478-10163581
Length = 367
Score = 29.5 bits (63), Expect = 1.6
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +2
Query: 176 EILSTVRCVWTPVTSLGDRNVQLAKPVSLMLCIMHLTMNWCVQRPL 313
E +S RC P+ G R + A SL + ++HL +C RPL
Sbjct: 240 EYMSPERCA--PMAMAGARVARAADVWSLGITVLHLYQGYCPARPL 283
>04_03_0867 -
20414999-20415160,20415255-20415384,20415515-20415702,
20415967-20416001,20416363-20416579,20416737-20416820,
20417609-20417875,20417954-20418061,20418163-20418249,
20418629-20419399
Length = 682
Score = 28.7 bits (61), Expect = 2.8
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +2
Query: 134 GSVLSVSTPFVHVVEILSTVRCVWTPVTSLGDRNVQLAKPVSLMLCIMHLTMN 292
G + P + VV + + C+W + SLG R Q++K + L ++ + +N
Sbjct: 270 GHQMVTINPLLSVVAA-TVIPCMWLVIASLGRRLRQISKEAHISLAMLTVYLN 321
>03_01_0350 - 2753217-2754152
Length = 311
Score = 28.7 bits (61), Expect = 2.8
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 46 GISEGPPAGKRAPIRKKRKYELGRPAANTR 135
G + PPA KR P R+++ +G A +TR
Sbjct: 242 GAAAAPPATKRTPQRRRKPESVGDEAIDTR 271
>08_01_0892 -
8778097-8778236,8778390-8778486,8778568-8778747,
8779138-8779247,8781153-8781294,8782298-8782686,
8782752-8782834,8783524-8785244,8785894-8786040,
8786121-8786264,8786669-8786741,8787413-8787633
Length = 1148
Score = 28.3 bits (60), Expect = 3.7
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = +1
Query: 217 FSWGSECSTRKTRIIDVVYNASNNELVRTKTLXQE 321
F W C+T ++ V + S +EL+ T + Q+
Sbjct: 728 FQWSGRCTTEDFKLNQVCIDGSRDELLETDVIRQD 762
>03_05_0936 -
28955486-28955683,28956320-28956424,28956550-28956693,
28957078-28957356,28957480-28957587,28958288-28958567,
28958724-28960029,28961301-28962342
Length = 1153
Score = 28.3 bits (60), Expect = 3.7
Identities = 21/72 (29%), Positives = 31/72 (43%)
Frame = +1
Query: 19 LRWVLVGITGISEGPPAGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRAL 198
LR L G S GP +R K+ + G A + GP+ SVRS + ++
Sbjct: 24 LRGELNGRGDASNGPTVQRRVAEPKEDDEQDGSEAGSNA-GPRGAASVRSADSSREFIVK 82
Query: 199 RLDTGNFSWGSE 234
+D G GS+
Sbjct: 83 EIDVGGLPNGSD 94
>03_01_0161 +
1307206-1307769,1307979-1308101,1308182-1308286,
1308688-1308867,1308988-1309050,1309151-1309345,
1309704-1309805,1309885-1309947,1310045-1310113,
1310215-1310270,1310587-1310755
Length = 562
Score = 27.5 bits (58), Expect = 6.4
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +1
Query: 151 IHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRT 303
+H + + GG T R +R + C +++ ++V++ + NELV T
Sbjct: 376 LHGLLASGGGTADRCIRFWNTTTNMHLNCVDTGSQVCNLVWSKNVNELVST 426
>07_01_0556 - 4136000-4136608
Length = 202
Score = 27.1 bits (57), Expect = 8.5
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +1
Query: 109 LGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNF 219
LG A+T R HS + RGG+T R + DT +F
Sbjct: 166 LGLILASTATWLARRHSAKVRGGSTVIRPVSGDTDDF 202
>07_01_0251 + 1874148-1874311,1874367-1874429,1874484-1874709,
1874830-1875081,1875158-1875267,1875720-1875815,
1875898-1875985,1876246-1876475,1876745-1876929,
1877136-1877335,1877592-1877924,1878058-1878159,
1878869-1879166,1879626-1879774,1879859-1880143,
1880531-1880728
Length = 992
Score = 27.1 bits (57), Expect = 8.5
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1
Query: 93 LAYGRTFPSRWPFAYASDP 37
++Y R FPS+W A SDP
Sbjct: 948 MSYTRKFPSKWRAASGSDP 966
>03_06_0019 - 31078669-31080081
Length = 470
Score = 27.1 bits (57), Expect = 8.5
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -3
Query: 133 WCLQRDALTHTSSSCVWAH 77
WC QR L H S++C +H
Sbjct: 340 WCPQRRVLAHASTACFVSH 358
>01_05_0361 +
21377080-21377281,21378619-21378705,21379862-21380134,
21380304-21380378,21380470-21380550,21380837-21381034,
21381145-21381234,21381310-21381467,21381619-21381741,
21381891-21382034,21382175-21382285,21382583-21382624,
21383043-21383261,21385319-21385627
Length = 703
Score = 27.1 bits (57), Expect = 8.5
Identities = 8/23 (34%), Positives = 16/23 (69%)
Frame = +1
Query: 43 TGISEGPPAGKRAPIRKKRKYEL 111
+G+ + PPA +R+P R K ++ +
Sbjct: 589 SGVGDAPPAWRRSPFRPKEEFRV 611
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,964,971
Number of Sequences: 37544
Number of extensions: 301368
Number of successful extensions: 858
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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