Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_M17
         (501 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50471-1|AAA93474.1|  135|Anopheles gambiae protein ( Anopheles ...    78   1e-16
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    23   7.7  
AY943929-1|AAX49502.1|  755|Anopheles gambiae laccase-2 isoform ...    23   7.7  
AY943928-1|AAX49501.1|  753|Anopheles gambiae laccase-2 isoform ...    23   7.7  

>U50471-1|AAA93474.1|  135|Anopheles gambiae protein ( Anopheles
           gambiae putativeribosomal protein S8 mRNA, complete cds.
           ).
          Length = 135

 Score = 78.2 bits (184), Expect = 1e-16
 Identities = 34/65 (52%), Positives = 49/65 (75%)
 Frame = +2

Query: 305 RPLXKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTXAXEAIINKKRSQKTAXKYLARQ 484
           + L KNAI+V+DA+PFRQWYESHY LPLG+K+  +L    E +++KKR++    KY+ RQ
Sbjct: 23  KTLVKNAIIVIDASPFRQWYESHYLLPLGKKR--ELKAGEEDVLSKKRTKSNLRKYVKRQ 80

Query: 485 RLAKV 499
           + AK+
Sbjct: 81  KNAKI 85



 Score = 46.8 bits (106), Expect = 4e-07
 Identities = 21/23 (91%), Positives = 22/23 (95%)
 Frame = +1

Query: 244 RKTRIIDVVYNASNNELVRTKTL 312
           RK RIIDVVYNASNNEL+RTKTL
Sbjct: 3   RKARIIDVVYNASNNELIRTKTL 25


>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 22.6 bits (46), Expect = 7.7
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 122 LQTPGSVLSVSTPFVHVVEILSTV 193
           + TP   +++STPF+    +LS +
Sbjct: 527 VNTPAGAINMSTPFIDSEIVLSAL 550


>AY943929-1|AAX49502.1|  755|Anopheles gambiae laccase-2 isoform B
           protein.
          Length = 755

 Score = 22.6 bits (46), Expect = 7.7
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +2

Query: 338 DATPFRQWYESHYTLP 385
           D TP   W+ SH T P
Sbjct: 43  DQTPAGSWWSSHLTEP 58


>AY943928-1|AAX49501.1|  753|Anopheles gambiae laccase-2 isoform A
           protein.
          Length = 753

 Score = 22.6 bits (46), Expect = 7.7
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +2

Query: 338 DATPFRQWYESHYTLP 385
           D TP   W+ SH T P
Sbjct: 43  DQTPAGSWWSSHLTEP 58


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 534,538
Number of Sequences: 2352
Number of extensions: 11880
Number of successful extensions: 22
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 44823054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)