Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_M17
(501 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8 prot... 157 2e-38
BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8 pr... 157 2e-38
AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8 pr... 157 2e-38
AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8 pr... 157 2e-38
AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8 pr... 97 3e-20
AB016767-1|BAA74724.1| 523|Homo sapiens telomerase transcriptas... 31 1.7
BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal pr... 31 2.3
AK127331-1|BAC86934.1| 178|Homo sapiens , member 1 (TRPV1). pr... 29 9.1
>X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 157 bits (381), Expect = 2e-38
Identities = 71/85 (83%), Positives = 76/85 (89%)
Frame = +1
Query: 70 GKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 249
GKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRLD GNFSWGSEC TRK
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRK 75
Query: 250 TRIIDVVYNASNNELVRTKTLXQEC 324
TRIIDVVYNASNNELVRTKTL + C
Sbjct: 76 TRIIDVVYNASNNELVRTKTLVKNC 100
Score = 92.3 bits (219), Expect = 9e-19
Identities = 41/65 (63%), Positives = 51/65 (78%)
Frame = +2
Query: 305 RPLXKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTXAXEAIINKKRSQKTAXKYLARQ 484
+ L KN IV++D+TP+RQWYESHY LPLGRKKGAKLT E I+NKKRS+K KY R+
Sbjct: 94 KTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERK 153
Query: 485 RLAKV 499
+ AK+
Sbjct: 154 KNAKI 158
Score = 34.3 bits (75), Expect = 0.24
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +3
Query: 24 MGISRDHWHKRRATG 68
MGISRD+WHKRR TG
Sbjct: 1 MGISRDNWHKRRKTG 15
>BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 157 bits (381), Expect = 2e-38
Identities = 71/85 (83%), Positives = 76/85 (89%)
Frame = +1
Query: 70 GKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 249
GKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRLD GNFSWGSEC TRK
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRK 75
Query: 250 TRIIDVVYNASNNELVRTKTLXQEC 324
TRIIDVVYNASNNELVRTKTL + C
Sbjct: 76 TRIIDVVYNASNNELVRTKTLVKNC 100
Score = 92.3 bits (219), Expect = 9e-19
Identities = 41/65 (63%), Positives = 51/65 (78%)
Frame = +2
Query: 305 RPLXKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTXAXEAIINKKRSQKTAXKYLARQ 484
+ L KN IV++D+TP+RQWYESHY LPLGRKKGAKLT E I+NKKRS+K KY R+
Sbjct: 94 KTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERK 153
Query: 485 RLAKV 499
+ AK+
Sbjct: 154 KNAKI 158
Score = 34.3 bits (75), Expect = 0.24
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +3
Query: 24 MGISRDHWHKRRATG 68
MGISRD+WHKRR TG
Sbjct: 1 MGISRDNWHKRRKTG 15
>AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 157 bits (381), Expect = 2e-38
Identities = 71/85 (83%), Positives = 76/85 (89%)
Frame = +1
Query: 70 GKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 249
GKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRLD GNFSWGSEC TRK
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRK 75
Query: 250 TRIIDVVYNASNNELVRTKTLXQEC 324
TRIIDVVYNASNNELVRTKTL + C
Sbjct: 76 TRIIDVVYNASNNELVRTKTLVKNC 100
Score = 92.3 bits (219), Expect = 9e-19
Identities = 41/65 (63%), Positives = 51/65 (78%)
Frame = +2
Query: 305 RPLXKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTXAXEAIINKKRSQKTAXKYLARQ 484
+ L KN IV++D+TP+RQWYESHY LPLGRKKGAKLT E I+NKKRS+K KY R+
Sbjct: 94 KTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERK 153
Query: 485 RLAKV 499
+ AK+
Sbjct: 154 KNAKI 158
Score = 34.3 bits (75), Expect = 0.24
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +3
Query: 24 MGISRDHWHKRRATG 68
MGISRD+WHKRR TG
Sbjct: 1 MGISRDNWHKRRKTG 15
>AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 157 bits (381), Expect = 2e-38
Identities = 71/85 (83%), Positives = 76/85 (89%)
Frame = +1
Query: 70 GKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 249
GKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRLD GNFSWGSEC TRK
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRK 75
Query: 250 TRIIDVVYNASNNELVRTKTLXQEC 324
TRIIDVVYNASNNELVRTKTL + C
Sbjct: 76 TRIIDVVYNASNNELVRTKTLVKNC 100
Score = 92.3 bits (219), Expect = 9e-19
Identities = 41/65 (63%), Positives = 51/65 (78%)
Frame = +2
Query: 305 RPLXKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTXAXEAIINKKRSQKTAXKYLARQ 484
+ L KN IV++D+TP+RQWYESHY LPLGRKKGAKLT E I+NKKRS+K KY R+
Sbjct: 94 KTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERK 153
Query: 485 RLAKV 499
+ AK+
Sbjct: 154 KNAKI 158
Score = 34.3 bits (75), Expect = 0.24
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +3
Query: 24 MGISRDHWHKRRATG 68
MGISRD+WHKRR TG
Sbjct: 1 MGISRDNWHKRRKTG 15
>AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8
protein.
Length = 188
Score = 97.1 bits (231), Expect = 3e-20
Identities = 54/85 (63%), Positives = 59/85 (69%)
Frame = +1
Query: 70 GKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 249
GKR P KKRKYELGRPAANT++GP+RIH+VR RGG C TRK
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGG-------------------C-TRK 55
Query: 250 TRIIDVVYNASNNELVRTKTLXQEC 324
TRIIDVVYNASNNELVRTKTL + C
Sbjct: 56 TRIIDVVYNASNNELVRTKTLVKNC 80
Score = 92.3 bits (219), Expect = 9e-19
Identities = 41/65 (63%), Positives = 51/65 (78%)
Frame = +2
Query: 305 RPLXKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTXAXEAIINKKRSQKTAXKYLARQ 484
+ L KN IV++D+TP+RQWYESHY LPLGRKKGAKLT E I+NKKRS+K KY R+
Sbjct: 74 KTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERK 133
Query: 485 RLAKV 499
+ AK+
Sbjct: 134 KNAKI 138
Score = 34.3 bits (75), Expect = 0.24
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +3
Query: 24 MGISRDHWHKRRATG 68
MGISRD+WHKRR TG
Sbjct: 1 MGISRDNWHKRRKTG 15
>AB016767-1|BAA74724.1| 523|Homo sapiens telomerase transcriptase
protein.
Length = 523
Score = 31.5 bits (68), Expect = 1.7
Identities = 26/70 (37%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Frame = -2
Query: 254 RVLRVEHSDPQEKLPVSRRSARYLVFPPRERTE----WIR*GPSLVFAAGRPNSYFLFLR 87
R R E PQ+ + V RS R L PPR RT+ W S AG + LR
Sbjct: 411 RTARCELRSPQQPVSVPGRSPRALWRPPRRRTQTPVAWCSCSASTAPLAG------VRLR 464
Query: 86 MGARFPAGGP 57
G PAG P
Sbjct: 465 AGLPAPAGAP 474
>BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal
protein S8 protein.
Length = 80
Score = 31.1 bits (67), Expect = 2.3
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +2
Query: 410 LTXAXEAIINKKRSQKTAXKYLARQRLAKV 499
LT E I+NKKRS+K KY R++ AK+
Sbjct: 1 LTPEEEEILNKKRSKKIQKKYDERKKNAKI 30
>AK127331-1|BAC86934.1| 178|Homo sapiens , member 1 (TRPV1).
protein.
Length = 178
Score = 29.1 bits (62), Expect = 9.1
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 320 NAIVVVDATPFRQWYESHYTLPLGRKKGAKLT 415
N I+ V TPF W + H++ P G LT
Sbjct: 5 NPIIAVFRTPFAPWLQFHWSAPFSAWLGTVLT 36
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,072,011
Number of Sequences: 237096
Number of extensions: 1719173
Number of successful extensions: 3462
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3462
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4593178062
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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