Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_M17
(501 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal prote... 126 7e-30
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis... 31 0.36
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis... 31 0.36
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis... 31 0.36
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis... 31 0.36
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis... 31 0.36
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res... 31 0.36
L14745-8|AAA27923.1| 244|Caenorhabditis elegans Tetraspanin fam... 28 4.4
U23515-13|AAK21453.1| 823|Caenorhabditis elegans Hypothetical p... 27 5.8
>U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 8 protein.
Length = 208
Score = 126 bits (305), Expect = 7e-30
Identities = 58/82 (70%), Positives = 69/82 (84%), Gaps = 1/82 (1%)
Frame = +1
Query: 70 GKRAPI-RKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTR 246
G P+ KKRK+ELGRPAANT++G R+ VR+RGGN KYRALRLD+GNFSW SE +TR
Sbjct: 15 GATQPVPHKKRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRLDSGNFSWASEQTTR 74
Query: 247 KTRIIDVVYNASNNELVRTKTL 312
KTRI+D +YNA+NNELVRTKTL
Sbjct: 75 KTRIVDTMYNATNNELVRTKTL 96
Score = 85.0 bits (201), Expect = 3e-17
Identities = 43/88 (48%), Positives = 55/88 (62%), Gaps = 1/88 (1%)
Frame = +2
Query: 239 QLAKPVSLMLCIMHLTMNWCVQ-RPLXKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLT 415
Q + ++ + + T N V+ + L K AI+ VDA PFRQWYE+HY LPL RKK AKL+
Sbjct: 71 QTTRKTRIVDTMYNATNNELVRTKTLVKGAIISVDAAPFRQWYEAHYALPLARKKNAKLS 130
Query: 416 XAXEAIINKKRSQKTAXKYLARQRLAKV 499
AI+NKKRS T KY RQ+ A V
Sbjct: 131 EEDNAILNKKRSHHTMKKYTERQKTAAV 158
Score = 30.7 bits (66), Expect = 0.62
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = +3
Query: 24 MGISRDHWHKRRATG 68
MGISRD WHKR TG
Sbjct: 1 MGISRDSWHKRYKTG 15
>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
resistance related protein1 protein.
Length = 1540
Score = 31.5 bits (68), Expect = 0.36
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +1
Query: 193 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 297
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform e protein.
Length = 1534
Score = 31.5 bits (68), Expect = 0.36
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +1
Query: 193 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 297
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform c protein.
Length = 1534
Score = 31.5 bits (68), Expect = 0.36
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +1
Query: 193 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 297
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform b protein.
Length = 1534
Score = 31.5 bits (68), Expect = 0.36
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +1
Query: 193 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 297
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform a protein.
Length = 1528
Score = 31.5 bits (68), Expect = 0.36
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +1
Query: 193 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 297
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
resistance-associatedprotein protein.
Length = 1534
Score = 31.5 bits (68), Expect = 0.36
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +1
Query: 193 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 297
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>L14745-8|AAA27923.1| 244|Caenorhabditis elegans Tetraspanin family
protein 1 protein.
Length = 244
Score = 27.9 bits (59), Expect = 4.4
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = -2
Query: 296 TNSLLDALYTTSMIRVLRV 240
TNSL+DA+YTT+ + L++
Sbjct: 133 TNSLIDAMYTTNSVNDLKI 151
>U23515-13|AAK21453.1| 823|Caenorhabditis elegans Hypothetical
protein R144.2a protein.
Length = 823
Score = 27.5 bits (58), Expect = 5.8
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 287 MNWCVQRPLXKNAIVVVDATPFRQWYESHYT 379
M+W V++ L ++ A P+RQWY S T
Sbjct: 697 MDWHVKQNLARHGSNNSAAVPYRQWYPSTST 727
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,532,642
Number of Sequences: 27780
Number of extensions: 248364
Number of successful extensions: 664
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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