Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_M17
         (501 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...   162   2e-42
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   4.1  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   4.1  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   4.1  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   5.5  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   5.5  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   5.5  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   5.5  

>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score =  162 bits (394), Expect = 2e-42
 Identities = 74/81 (91%), Positives = 79/81 (97%)
 Frame = +1

Query: 70  GKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRK 249
           GKR PIRKKRK+ELGRPAANT+LGPQRIH+VR+RGGN KYRALRLDTGNFSWGSEC+TRK
Sbjct: 16  GKRKPIRKKRKFELGRPAANTKLGPQRIHTVRTRGGNKKYRALRLDTGNFSWGSECTTRK 75

Query: 250 TRIIDVVYNASNNELVRTKTL 312
           TRIIDVVYNASNNELVRTKTL
Sbjct: 76  TRIIDVVYNASNNELVRTKTL 96



 Score =  102 bits (245), Expect = 2e-24
 Identities = 46/65 (70%), Positives = 52/65 (80%)
 Frame = +2

Query: 305 RPLXKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTXAXEAIINKKRSQKTAXKYLARQ 484
           + L KNAIV +DATPFRQWYE HY LPLGRK+GAKLT A E ++NKKRS+K   KY ARQ
Sbjct: 94  KTLVKNAIVTIDATPFRQWYEGHYVLPLGRKRGAKLTEAEEEVLNKKRSKKAEAKYKARQ 153

Query: 485 RLAKV 499
           R AKV
Sbjct: 154 RFAKV 158



 Score = 39.1 bits (87), Expect = 3e-05
 Identities = 15/15 (100%), Positives = 15/15 (100%)
 Frame = +3

Query: 24 MGISRDHWHKRRATG 68
          MGISRDHWHKRRATG
Sbjct: 1  MGISRDHWHKRRATG 15


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 367 LIPLPEWSCIYYNNC 323
           L P P+WS   Y++C
Sbjct: 104 LQPYPDWSFAKYDDC 118


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 367 LIPLPEWSCIYYNNC 323
           L P P+WS   Y++C
Sbjct: 104 LQPYPDWSFAKYDDC 118


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 367 LIPLPEWSCIYYNNC 323
           L P P+WS   Y++C
Sbjct: 104 LQPYPDWSFAKYDDC 118


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 367 LIPLPEWSCIYYNNC 323
           L P P+WS   Y +C
Sbjct: 109 LQPYPDWSFAKYEDC 123


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 367 LIPLPEWSCIYYNNC 323
           L P P+WS   Y +C
Sbjct: 110 LRPYPDWSFAKYEDC 124


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 367 LIPLPEWSCIYYNNC 323
           L P P+WS   Y +C
Sbjct: 108 LQPYPDWSWANYKDC 122


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 367 LIPLPEWSCIYYNNC 323
           L P P+WS   Y +C
Sbjct: 108 LQPYPDWSWANYKDC 122


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,170
Number of Sequences: 438
Number of extensions: 2981
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)