Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_M16
         (444 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31E1.03 |hub1|ubl4|ubiquitin-like protein modifier Hub1|Schi...   128   4e-31
SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   3.0  
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M...    26   3.0  
SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|...    25   6.9  
SPAC1556.07 |pmm1||phosphomannomutase Pmm1|Schizosaccharomyces p...    25   6.9  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   6.9  
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch...    25   6.9  
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc...    24   9.1  
SPCC306.07c |||U3 snoRNP-associated protein Cic1/Utp30 family|Sc...    24   9.1  
SPCC965.08c |alr1||alanine racemase Alr1|Schizosaccharomyces pom...    24   9.1  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    24   9.1  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     24   9.1  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    24   9.1  

>SPBC31E1.03 |hub1|ubl4|ubiquitin-like protein modifier
           Hub1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 73

 Score =  128 bits (309), Expect = 4e-31
 Identities = 57/72 (79%), Positives = 65/72 (90%)
 Frame = +1

Query: 127 MLEVTCNDRLGKKVRVKCNPDDTVGDLKKLIAAQTGTRYDKIVLKKWYTVFKDHIKLADY 306
           M+EV CNDRLGKKVRVKC PDDTVGD KKL+AAQTGT   +IVLKKW++VFKD+I LADY
Sbjct: 1   MIEVLCNDRLGKKVRVKCMPDDTVGDFKKLVAAQTGTDPRRIVLKKWHSVFKDNITLADY 60

Query: 307 EIHDGMNLELYY 342
           EIHDGM+LE+YY
Sbjct: 61  EIHDGMSLEMYY 72


>SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 225

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -3

Query: 229 FVRLLTSLNHPRY 191
           FV+ +TSLNHP Y
Sbjct: 87  FVKYITSLNHPEY 99


>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 663

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +1

Query: 163 KVRVKCNPDDTVGDLKKLIAAQTGTRYDKIVLKKWYTVFKDHI 291
           K +   NP++T+ D+K+LI    G ++D+  + K    F  HI
Sbjct: 87  KNQAPSNPENTIFDIKRLI----GRKFDEKTMAKDIKSFPFHI 125


>SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 187

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -3

Query: 196 RYRQGCI*LEPSYRVD-HCMLLQAFCSQISSQFY*EIKYINSNFLFVLVILPPF 38
           R +Q C   E   R+   C L + F   +S +      +I+ + + VL++LPPF
Sbjct: 51  RSKQNCRLKEIYCRLKIRCRLKKKFIKSLSKKII-SYHFISFHTIVVLLLLPPF 103


>SPAC1556.07 |pmm1||phosphomannomutase Pmm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 257

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +1

Query: 181 NPDDTVGDLKKL 216
           NPDDT+ +LKK+
Sbjct: 243 NPDDTIAELKKI 254


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 10/26 (38%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
 Frame = +1

Query: 124  KMLEVTCNDRLGKKVR--VKCNPDDT 195
            +++EV CNDR G +    +K +P++T
Sbjct: 1872 EVIEVVCNDRSGHRQSSVIKIDPNET 1897


>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 271

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = -2

Query: 248 LSYLVPVCAAINFFKSPTVSSGLHLTRT 165
           +S + P+C+A+    + T+S+ L + +T
Sbjct: 172 ISVIAPICSALGTVVATTISTPLDIVKT 199


>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +1

Query: 160 KKVRVKCNPDDTVGDLKKLIAAQTGTRYDKIVLKKWYTVFKDHIKLADYEIHDGMNLEL 336
           +K  V  + + +V  LK+ IA       ++  L     V KD   L  Y+I DG ++ L
Sbjct: 14  QKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYKIQDGHSIHL 72


>SPCC306.07c |||U3 snoRNP-associated protein Cic1/Utp30
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 284

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 218 INFFKSPTVSSGLHLTRTFLPSRSLHVTSSILL 120
           +N F+     S    ++ FLP R +HVT + L+
Sbjct: 49  VNTFQPVEKESLRRPSKVFLPHRIMHVTDACLI 81


>SPCC965.08c |alr1||alanine racemase Alr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 375

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +1

Query: 196 VGDLKKLIAAQTGTRYDKIVLKKWYTVFKDHIKLAD 303
           V  +++ +  + G  Y+KIVL + +   +D +KL D
Sbjct: 65  VSSIEEALELRHGGIYNKIVLLEGFFTEEDELKLID 100


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 115  ISSQFY*EIKYINSNFLFVLVILPPFKIFT 26
            ISS  Y ++ + +SNFLF  + +  + + T
Sbjct: 1204 ISSTLYLKVSFCSSNFLFKTISVLVYDLIT 1233


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -1

Query: 351 LLLIVQLQI--HSIVDFIVCKFNMILEYCVPFLEYYFV 244
           LL I QL+I   S+  F +C   M   Y  PFLE+ ++
Sbjct: 626 LLSINQLKIVVGSLFMFTICNLLMYYLYGSPFLEHTYL 663


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 358 NVFIIDSTAPNSFHRGFH 305
           N F++ S  PNS+H GFH
Sbjct: 531 NEFLVVS--PNSYHMGFH 546


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,314,569
Number of Sequences: 5004
Number of extensions: 23124
Number of successful extensions: 75
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)