Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_M16
(444 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29945| Best HMM Match : DUF125 (HMM E-Value=1.7) 32 0.24
SB_51101| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.57
SB_40105| Best HMM Match : La (HMM E-Value=4.3) 31 0.57
SB_34066| Best HMM Match : Queuosine_synth (HMM E-Value=2) 31 0.57
SB_27331| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.57
SB_23671| Best HMM Match : Tetraspannin (HMM E-Value=6.6e-38) 31 0.57
SB_18699| Best HMM Match : Queuosine_synth (HMM E-Value=5.3) 31 0.57
SB_2310| Best HMM Match : Borrelia_orfA (HMM E-Value=1.6) 31 0.57
SB_56698| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.57
SB_48523| Best HMM Match : Choline_kin_N (HMM E-Value=2.8) 31 0.57
SB_43624| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.57
SB_42064| Best HMM Match : Queuosine_synth (HMM E-Value=2.4) 31 0.57
SB_27266| Best HMM Match : GBP_C (HMM E-Value=1.4) 31 0.57
SB_19533| Best HMM Match : UME (HMM E-Value=0.53) 31 0.57
SB_18050| Best HMM Match : Queuosine_synth (HMM E-Value=7.8) 31 0.57
SB_9498| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.57
SB_42868| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.0
>SB_29945| Best HMM Match : DUF125 (HMM E-Value=1.7)
Length = 608
Score = 31.9 bits (69), Expect = 0.24
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = +1
Query: 118 ESKMLEVTCNDRLGKKVRVKCNPDDTVGDLKKLIAAQTGTRYDKIVLKKW 267
E++ E+ D + + C+P ++G++ + +AA G RY LK+W
Sbjct: 535 ETRQRELQSFDVVNRLCDYACSPHVSMGNITEALAAYIGHRYTASSLKRW 584
>SB_51101| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1109
Score = 30.7 bits (66), Expect = 0.57
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +1
Query: 220 AAQTGTRYDKIVLKKWYTVFKDHIKLADYEIHDGMNL 330
A TG R DK++ WYT K DYE G ++
Sbjct: 664 ATATGWRLDKLLRSLWYTFSDSPAKREDYEAISGSSM 700
>SB_40105| Best HMM Match : La (HMM E-Value=4.3)
Length = 434
Score = 30.7 bits (66), Expect = 0.57
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +1
Query: 220 AAQTGTRYDKIVLKKWYTVFKDHIKLADYEIHDGMNL 330
A TG R DK++ WYT K DYE G ++
Sbjct: 273 ATATGWRLDKLLRSLWYTFSDSPAKREDYEAISGSSM 309
>SB_34066| Best HMM Match : Queuosine_synth (HMM E-Value=2)
Length = 318
Score = 30.7 bits (66), Expect = 0.57
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +1
Query: 220 AAQTGTRYDKIVLKKWYTVFKDHIKLADYEIHDGMNL 330
A TG R DK++ WYT K DYE G ++
Sbjct: 273 ATATGWRLDKLLRSLWYTFSDSPAKREDYEAISGSSM 309
>SB_27331| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 223
Score = 30.7 bits (66), Expect = 0.57
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +1
Query: 220 AAQTGTRYDKIVLKKWYTVFKDHIKLADYEIHDGMNL 330
A TG R DK++ WYT K DYE G ++
Sbjct: 8 ATATGWRLDKLLRSLWYTFSDSPAKREDYEAISGSSM 44
>SB_23671| Best HMM Match : Tetraspannin (HMM E-Value=6.6e-38)
Length = 919
Score = 30.7 bits (66), Expect = 0.57
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +1
Query: 220 AAQTGTRYDKIVLKKWYTVFKDHIKLADYEIHDGMNL 330
A TG R DK++ WYT K DYE G ++
Sbjct: 432 ATATGWRLDKLLRSLWYTFSDSPAKREDYEAISGSSM 468
>SB_18699| Best HMM Match : Queuosine_synth (HMM E-Value=5.3)
Length = 230
Score = 30.7 bits (66), Expect = 0.57
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +1
Query: 220 AAQTGTRYDKIVLKKWYTVFKDHIKLADYEIHDGMNL 330
A TG R DK++ WYT K DYE G ++
Sbjct: 161 ATATGWRLDKLLRSLWYTFSDSPAKREDYEAISGSSM 197
>SB_2310| Best HMM Match : Borrelia_orfA (HMM E-Value=1.6)
Length = 725
Score = 30.7 bits (66), Expect = 0.57
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +1
Query: 220 AAQTGTRYDKIVLKKWYTVFKDHIKLADYEIHDGMNL 330
A TG R DK++ WYT K DYE G ++
Sbjct: 238 ATATGWRLDKLLRSLWYTFSDSPAKREDYEAISGSSM 274
>SB_56698| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 30.7 bits (66), Expect = 0.57
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +1
Query: 220 AAQTGTRYDKIVLKKWYTVFKDHIKLADYEIHDGMNL 330
A TG R DK++ WYT K DYE G ++
Sbjct: 161 ATATGWRLDKLLRSLWYTFSDSPAKREDYEAISGSSM 197
>SB_48523| Best HMM Match : Choline_kin_N (HMM E-Value=2.8)
Length = 443
Score = 30.7 bits (66), Expect = 0.57
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +1
Query: 220 AAQTGTRYDKIVLKKWYTVFKDHIKLADYEIHDGMNL 330
A TG R DK++ WYT K DYE G ++
Sbjct: 100 ATATGWRLDKLLRSLWYTFSDSPAKREDYEAISGSSM 136
>SB_43624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1018
Score = 30.7 bits (66), Expect = 0.57
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +1
Query: 220 AAQTGTRYDKIVLKKWYTVFKDHIKLADYEIHDGMNL 330
A TG R DK++ WYT K DYE G ++
Sbjct: 803 ATATGWRLDKLLRSLWYTFSDSPAKREDYEAISGSSM 839
>SB_42064| Best HMM Match : Queuosine_synth (HMM E-Value=2.4)
Length = 623
Score = 30.7 bits (66), Expect = 0.57
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +1
Query: 220 AAQTGTRYDKIVLKKWYTVFKDHIKLADYEIHDGMNL 330
A TG R DK++ WYT K DYE G ++
Sbjct: 273 ATATGWRLDKLLRSLWYTFSDSPAKREDYEAISGSSM 309
>SB_27266| Best HMM Match : GBP_C (HMM E-Value=1.4)
Length = 934
Score = 30.7 bits (66), Expect = 0.57
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +1
Query: 220 AAQTGTRYDKIVLKKWYTVFKDHIKLADYEIHDGMNL 330
A TG R DK++ WYT K DYE G ++
Sbjct: 469 ATATGWRLDKLLRSLWYTFSDSPAKREDYEAISGSSM 505
>SB_19533| Best HMM Match : UME (HMM E-Value=0.53)
Length = 522
Score = 30.7 bits (66), Expect = 0.57
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +1
Query: 220 AAQTGTRYDKIVLKKWYTVFKDHIKLADYEIHDGMNL 330
A TG R DK++ WYT K DYE G ++
Sbjct: 118 ATATGWRLDKLLRSLWYTFSDSPAKREDYEAISGSSM 154
>SB_18050| Best HMM Match : Queuosine_synth (HMM E-Value=7.8)
Length = 230
Score = 30.7 bits (66), Expect = 0.57
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +1
Query: 220 AAQTGTRYDKIVLKKWYTVFKDHIKLADYEIHDGMNL 330
A TG R DK++ WYT K DYE G ++
Sbjct: 161 ATATGWRLDKLLRSLWYTFSDSPAKREDYEAISGSSM 197
>SB_9498| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 651
Score = 30.7 bits (66), Expect = 0.57
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +1
Query: 220 AAQTGTRYDKIVLKKWYTVFKDHIKLADYEIHDGMNL 330
A TG R DK++ WYT K DYE G ++
Sbjct: 265 ATATGWRLDKLLRSLWYTFSDSPAKREDYEAISGSSM 301
>SB_42868| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1353
Score = 28.7 bits (61), Expect = 2.3
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +1
Query: 187 DDTVGDLKKLIAAQTGTRYD--KIVLKKWYTVFKDHIKLADYEIHDGMNLEL 336
D TVGDLK ++ +TG ++V+ + +F ++ L DY I G + L
Sbjct: 84 DTTVGDLKTMVTNKTGLHVSVFRLVIPEGKEMFDCNL-LKDYNISTGDTIRL 134
>SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2708
Score = 27.1 bits (57), Expect = 7.0
Identities = 8/18 (44%), Positives = 16/18 (88%)
Frame = -1
Query: 192 IVRVAFNSNLLTESIIAC 139
++RVAFN N ++E++++C
Sbjct: 2236 LIRVAFNQNRVSEAVLSC 2253
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,178,556
Number of Sequences: 59808
Number of extensions: 158944
Number of successful extensions: 418
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 871599479
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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