Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_M15
         (667 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal prote...    95   3e-20
Z83102-9|CAI79156.1|   82|Caenorhabditis elegans Hypothetical pr...    31   0.73 
AC024809-9|AAO12399.1|  700|Caenorhabditis elegans Hypothetical ...    29   3.9  
AC024809-8|AAF59546.2|  741|Caenorhabditis elegans Hypothetical ...    29   3.9  

>U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 6 protein.
          Length = 217

 Score = 95.5 bits (227), Expect = 3e-20
 Identities = 49/91 (53%), Positives = 62/91 (68%), Gaps = 1/91 (1%)
 Frame = +1

Query: 379 IRPNLKIGTVCILLAGRHAGKRVVLVGILP-SGLLLVTGPFAFNSCPLRRIPQRYVIGTS 555
           +R  L  GTV I+LAGRH GKRVV +  LP SGLLLVTGP   N  PLRRI Q +VI TS
Sbjct: 67  LRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATS 126

Query: 556 TRISLGNFKLPKHFNDDYFXKNKKCVKRTVK 648
            ++++   K+P+H ND+YF K K   ++T K
Sbjct: 127 LKVNVSGVKIPEHINDEYF-KRKSTAQKTGK 156



 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +1

Query: 115 RNYDLGNGVMRFSKSKMFHKKAKYK 189
           RN+DL  GV+RFS S++  KK + K
Sbjct: 12  RNFDLSPGVLRFSASRLRLKKGEKK 36


>Z83102-9|CAI79156.1|   82|Caenorhabditis elegans Hypothetical
           protein C54C8.12 protein.
          Length = 82

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +1

Query: 310 FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKR 444
           FYPT+   +A S G P +       PN ++  V    A RHAG R
Sbjct: 26  FYPTEISTKARSHGHPVNTLGESEDPNFQVDNVPGERARRHAGPR 70


>AC024809-9|AAO12399.1|  700|Caenorhabditis elegans Hypothetical
           protein Y53G8AR.2b protein.
          Length = 700

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 20  FEYWLQHSLKRRPSLLPHL 76
           +EYW Q  + R  SL+PHL
Sbjct: 460 YEYWKQRRMSRGTSLIPHL 478


>AC024809-8|AAF59546.2|  741|Caenorhabditis elegans Hypothetical
           protein Y53G8AR.2a protein.
          Length = 741

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 20  FEYWLQHSLKRRPSLLPHL 76
           +EYW Q  + R  SL+PHL
Sbjct: 501 YEYWKQRRMSRGTSLIPHL 519


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,048,205
Number of Sequences: 27780
Number of extensions: 313520
Number of successful extensions: 716
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)