Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_M12
(665 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 278 3e-75
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 275 2e-74
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 117 9e-27
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 117 9e-27
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 92 3e-19
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 91 6e-19
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 79 3e-15
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 79 3e-15
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 71 6e-13
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 44 1e-04
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 44 1e-04
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 44 1e-04
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 37 0.015
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 37 0.015
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 35 0.060
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 35 0.060
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 35 0.060
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 35 0.060
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 34 0.079
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 34 0.079
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 34 0.10
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 33 0.24
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter... 32 0.32
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 31 0.56
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 31 0.97
U41992-4|AAL02506.2| 876|Caenorhabditis elegans Hypothetical pr... 31 0.97
AL009246-7|CAA15840.2| 347|Caenorhabditis elegans Hypothetical ... 30 1.7
AF000264-4|AAC71125.3| 631|Caenorhabditis elegans Hypothetical ... 30 1.7
Z99171-6|CAB16309.2| 128|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z74472-5|CAA98943.1| 802|Caenorhabditis elegans Hypothetical pr... 29 3.0
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 29 3.0
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 29 3.0
Z69792-3|CAA93666.1| 284|Caenorhabditis elegans Hypothetical pr... 29 3.9
U41027-7|AAP46276.1| 1465|Caenorhabditis elegans Hypothetical pr... 29 3.9
U41027-6|AAC48194.5| 1512|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z81143-5|CAB03518.2| 370|Caenorhabditis elegans Hypothetical pr... 28 5.2
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z73098-4|CAD44145.1| 565|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z73098-3|CAD44144.1| 501|Caenorhabditis elegans Hypothetical pr... 28 6.8
U41104-4|AAK67239.1| 388|Caenorhabditis elegans Nuclear hormone... 28 6.8
AF083231-1|AAD03689.1| 388|Caenorhabditis elegans nuclear recep... 28 6.8
AF040652-7|AAB95017.1| 210|Caenorhabditis elegans Hypothetical ... 28 6.8
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 27 9.1
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 278 bits (681), Expect = 3e-75
Identities = 145/198 (73%), Positives = 158/198 (79%), Gaps = 8/198 (4%)
Frame = +1
Query: 94 LDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQD 273
+DEIR +MD+KRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAG++AGETRFTDTRKDEQ+
Sbjct: 6 VDEIRALMDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTRKDEQE 65
Query: 274 RCITIKSTAISMFFELEXKDLVFITNPDQRE------KSEK--GFLINLIDSPGHVDFSS 429
RCITIKSTAIS+FFELE KDL F+ +Q E K EK GFLINLIDSPGHVDFSS
Sbjct: 66 RCITIKSTAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSS 125
Query: 430 EVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXX 609
EVTAALRVTDGAL QTETVLRQAIAERIKP+LFMNKMDR
Sbjct: 126 EVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLGAEE 185
Query: 610 XYXTFQRIVQNVNVIIAT 663
+ TFQRIV+N+NVIIAT
Sbjct: 186 LFQTFQRIVENINVIIAT 203
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 275 bits (674), Expect = 2e-74
Identities = 144/198 (72%), Positives = 157/198 (79%), Gaps = 8/198 (4%)
Frame = +1
Query: 94 LDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQD 273
+DEIR +MD+KRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAG++AGETRFTDTRKDEQ+
Sbjct: 6 VDEIRALMDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTRKDEQE 65
Query: 274 RCITIKSTAISMFFELEXKDLVFITNPDQRE------KSEK--GFLINLIDSPGHVDFSS 429
RCITIKSTAIS+FFELE KDL F+ +Q E K EK GFLINLIDSPGHVDFSS
Sbjct: 66 RCITIKSTAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSS 125
Query: 430 EVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXX 609
EVTAAL VTDGAL QTETVLRQAIAERIKP+LFMNKMDR
Sbjct: 126 EVTAALGVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLGAEE 185
Query: 610 XYXTFQRIVQNVNVIIAT 663
+ TFQRIV+N+NVIIAT
Sbjct: 186 LFQTFQRIVENINVIIAT 203
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 117 bits (281), Expect = 9e-27
Identities = 71/177 (40%), Positives = 97/177 (54%)
Frame = +1
Query: 130 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISM 309
+IRN+ ++AHVDHGK++ DSLVS +I+ AG+ R+ D+R+DEQ R IT+KS+ IS+
Sbjct: 19 HIRNVCLVAHVDHGKTSFADSLVSANAVISSRMAGKLRYMDSREDEQTRGITMKSSGISL 78
Query: 310 FFELEXKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXX 489
E LINLIDSPGHVDFS EVT+AL ++D AL
Sbjct: 79 LCE--------------------PLLINLIDSPGHVDFSGEVTSALILSDIALLLIDVIE 118
Query: 490 XXXXQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYXTFQRIVQNVNVIIA 660
QTE ++RQ I IL +NK+DR Y R+++ VN I+
Sbjct: 119 GICSQTEALIRQVIRNGQAMILVINKIDRLRVELKMSSSEAYQHMSRLIEGVNSCIS 175
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 117 bits (281), Expect = 9e-27
Identities = 71/177 (40%), Positives = 97/177 (54%)
Frame = +1
Query: 130 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISM 309
+IRN+ ++AHVDHGK++ DSLVS +I+ AG+ R+ D+R+DEQ R IT+KS+ IS+
Sbjct: 19 HIRNVCLVAHVDHGKTSFADSLVSANAVISSRMAGKLRYMDSREDEQTRGITMKSSGISL 78
Query: 310 FFELEXKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXX 489
E LINLIDSPGHVDFS EVT+AL ++D AL
Sbjct: 79 LCE--------------------PLLINLIDSPGHVDFSGEVTSALILSDIALLLIDVIE 118
Query: 490 XXXXQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYXTFQRIVQNVNVIIA 660
QTE ++RQ I IL +NK+DR Y R+++ VN I+
Sbjct: 119 GICSQTEALIRQVIRNGQAMILVINKIDRLRVELKMSSSEAYQHMSRLIEGVNSCIS 175
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 92.3 bits (219), Expect = 3e-19
Identities = 60/194 (30%), Positives = 95/194 (48%), Gaps = 1/194 (0%)
Frame = +1
Query: 85 ISRLDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGI-IAGARAGETRFTDTRK 261
+ + + + +MD +RN+++ H+ HGK+T D L+ + A + RFTD
Sbjct: 116 VYKKEYLADLMDCPHIMRNVAIAGHLHHGKTTFLDCLMEQTHPEFYRAEDADARFTDILF 175
Query: 262 DEQDRCITIKSTAISMFFELEXKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTA 441
E+ R +IKS +S I D R KS +L+N+ID+PGHV+FS E+TA
Sbjct: 176 IEKQRGCSIKSQPVS------------IVAQDSRSKS---YLLNIIDTPGHVNFSDEMTA 220
Query: 442 ALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYXT 621
+ R+ DG + TE +R AI ER+ L ++K+DR Y
Sbjct: 221 SYRLADGVVVMVDAHEGVMMNTERAIRHAIQERLAVTLCISKIDRLLLELKLPPADAYFK 280
Query: 622 FQRIVQNVNVIIAT 663
+ I+ VN I++T
Sbjct: 281 LRLIIDQVNNILST 294
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 91.1 bits (216), Expect = 6e-19
Identities = 60/184 (32%), Positives = 90/184 (48%), Gaps = 1/184 (0%)
Frame = +1
Query: 115 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGI-IAGARAGETRFTDTRKDEQDRCITIK 291
MD +RN+++ H+ HGK+T D L+ + A + RFTD E+ R +IK
Sbjct: 1 MDCPHIMRNVAIAGHLHHGKTTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRGCSIK 60
Query: 292 STAISMFFELEXKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALX 471
S +S I D R KS +L+N+ID+PGHV+FS E+TA+ R+ DG +
Sbjct: 61 SQPVS------------IVAQDSRSKS---YLLNIIDTPGHVNFSDEMTASYRLADGVVV 105
Query: 472 XXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYXTFQRIVQNVNV 651
TE +R AI ER+ L ++K+DR Y + I+ VN
Sbjct: 106 MVDAHEGVMMNTERAIRHAIQERLAVTLCISKIDRLLLELKLPPADAYFKLRLIIDQVNN 165
Query: 652 IIAT 663
I++T
Sbjct: 166 ILST 169
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 79.0 bits (186), Expect = 3e-15
Identities = 51/147 (34%), Positives = 75/147 (51%)
Frame = +1
Query: 133 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMF 312
IRN ++AHVDHGKSTL D L+ G + G+ + D + E++R IT+K+ ++
Sbjct: 42 IRNFGIVAHVDHGKSTLADRLLEMCGAVP---PGQKQMLDKLQVERERGITVKAQTAAL- 97
Query: 313 FELEXKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXX 492
+G+L+NLID+PGHVDFS+EV+ +L V DG L
Sbjct: 98 -------------------RHRGYLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQG 138
Query: 493 XXXQTETVLRQAIAERIKPILFMNKMD 573
QT A + I+ I +NK+D
Sbjct: 139 VQAQTIANFWLAFEKNIQIIPVINKID 165
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 79.0 bits (186), Expect = 3e-15
Identities = 56/150 (37%), Positives = 78/150 (52%), Gaps = 2/150 (1%)
Frame = +1
Query: 133 IRNMSVIAHVDHGKSTLTDSLVSKAGII--AGARAGETRFTDTRKDEQDRCITIKSTAIS 306
+RN+ VIAHVD GK+T+T+ L+ AG I AG TD E++R IT++S A++
Sbjct: 25 LRNIGVIAHVDAGKTTVTERLLYLAGAIHVAGHVDKGNTVTDFLDIERERGITVQSAAVN 84
Query: 307 MFFELEXKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXX 486
+ + KG INLID+PGHVDF EV +RV DG +
Sbjct: 85 LDW--------------------KGHRINLIDTPGHVDFRVEVERCVRVLDGIVVVIDGS 124
Query: 487 XXXXXQTETVLRQAIAERIKPILFMNKMDR 576
QT TV RQ+ ++ F+NKMD+
Sbjct: 125 AGVQPQTLTVWRQSSKFKLPAHFFINKMDK 154
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 71.3 bits (167), Expect = 6e-13
Identities = 54/148 (36%), Positives = 72/148 (48%)
Frame = +1
Query: 133 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMF 312
IRN+ + AH+D GK+T+T+ ++ AG I E R D D F
Sbjct: 44 IRNIGISAHIDSGKTTVTERILYYAGRIDSMH--EVRGKDDVGATMD------------F 89
Query: 313 FELEXKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXX 492
+LE + + I + G IN+ID+PGHVDF+ EV ALRV DGA+
Sbjct: 90 MDLERQRGITIQSA-ATYVDWHGTNINIIDTPGHVDFTVEVERALRVLDGAVLVLCGVGG 148
Query: 493 XXXQTETVLRQAIAERIKPILFMNKMDR 576
QT TV RQ + I F+NKMDR
Sbjct: 149 VQSQTFTVNRQLARYNVPFICFVNKMDR 176
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 44.0 bits (99), Expect = 1e-04
Identities = 41/148 (27%), Positives = 61/148 (41%), Gaps = 3/148 (2%)
Frame = +1
Query: 139 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFE 318
N+ I HVDHGK+TLT ++ GA+ + D +E+ R ITI + F
Sbjct: 51 NVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINA------FH 104
Query: 319 LEXKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXX 498
LE E +++ + ID PGH D+ + +GA+
Sbjct: 105 LEY------------ETAKRHYA--HIDCPGHADYIKNMITGAAQMEGAILVVAATDGPM 150
Query: 499 XQTETVL---RQAIAERIKPILFMNKMD 573
QT L RQ ++FMNK+D
Sbjct: 151 PQTREHLLLARQVGVPLDNIVVFMNKVD 178
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 44.0 bits (99), Expect = 1e-04
Identities = 41/148 (27%), Positives = 61/148 (41%), Gaps = 3/148 (2%)
Frame = +1
Query: 139 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFE 318
N+ I HVDHGK+TLT ++ GA+ + D +E+ R ITI + F
Sbjct: 52 NVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINA------FH 105
Query: 319 LEXKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXX 498
LE E +++ + ID PGH D+ + +GA+
Sbjct: 106 LEY------------ETAKRHYA--HIDCPGHADYIKNMITGAAQMEGAILVVAATDGPM 151
Query: 499 XQTETVL---RQAIAERIKPILFMNKMD 573
QT L RQ ++FMNK+D
Sbjct: 152 PQTREHLLLARQVGVPLDNIVVFMNKVD 179
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 44.0 bits (99), Expect = 1e-04
Identities = 41/148 (27%), Positives = 61/148 (41%), Gaps = 3/148 (2%)
Frame = +1
Query: 139 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFE 318
N+ I HVDHGK+TLT ++ GA+ + D +E+ R ITI + F
Sbjct: 52 NVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINA------FH 105
Query: 319 LEXKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXX 498
LE E +++ + ID PGH D+ + +GA+
Sbjct: 106 LEY------------ETAKRHYA--HIDCPGHADYIKNMITGAAQMEGAILVVAATDGPM 151
Query: 499 XQTETVL---RQAIAERIKPILFMNKMD 573
QT L RQ ++FMNK+D
Sbjct: 152 PQTREHLLLARQVGVPLDNIVVFMNKVD 179
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 36.7 bits (81), Expect = 0.015
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 1/115 (0%)
Frame = +1
Query: 127 RNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAIS 306
+++ N+ V+ HVD GKSTL L+ ++ ++R D K E R
Sbjct: 168 KDLINLIVVGHVDAGKSTLMGHLLHDLEVV------DSRTIDKFKHEAARNGKASFAYAW 221
Query: 307 MFFELEXKDLVFITNPDQREKSEKGF-LINLIDSPGHVDFSSEVTAALRVTDGAL 468
+ E E + +T R E I L+D+PGH DF S + D A+
Sbjct: 222 VLDETEEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAI 276
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 36.7 bits (81), Expect = 0.015
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 1/115 (0%)
Frame = +1
Query: 127 RNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAIS 306
+++ N+ V+ HVD GKSTL L+ ++ ++R D K E R
Sbjct: 186 KDLINLIVVGHVDAGKSTLMGHLLHDLEVV------DSRTIDKFKHEAARNGKASFAYAW 239
Query: 307 MFFELEXKDLVFITNPDQREKSEKGF-LINLIDSPGHVDFSSEVTAALRVTDGAL 468
+ E E + +T R E I L+D+PGH DF S + D A+
Sbjct: 240 VLDETEEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAI 294
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 34.7 bits (76), Expect = 0.060
Identities = 35/118 (29%), Positives = 55/118 (46%)
Frame = +1
Query: 115 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS 294
M K++ N+ VI HVD GKST T L+ K G I R E +F + E + + K
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGI-DKRTIE-KF-EKEAQEMGKG-SFKY 56
Query: 295 TAISMFFELEXKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 468
+ + E + + I + ++ K + I +ID+PGH DF + D A+
Sbjct: 57 AWVLDKLKAERERGITIDIALWKFETAK-YYITIIDAPGHRDFIKNMITGTSQADCAV 113
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 34.7 bits (76), Expect = 0.060
Identities = 35/118 (29%), Positives = 55/118 (46%)
Frame = +1
Query: 115 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS 294
M K++ N+ VI HVD GKST T L+ K G I R E +F + E + + K
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGI-DKRTIE-KF-EKEAQEMGKG-SFKY 56
Query: 295 TAISMFFELEXKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 468
+ + E + + I + ++ K + I +ID+PGH DF + D A+
Sbjct: 57 AWVLDKLKAERERGITIDIALWKFETAK-YYITIIDAPGHRDFIKNMITGTSQADCAV 113
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 34.7 bits (76), Expect = 0.060
Identities = 35/118 (29%), Positives = 55/118 (46%)
Frame = +1
Query: 115 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS 294
M K++ N+ VI HVD GKST T L+ K G I R E +F + E + + K
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGI-DKRTIE-KF-EKEAQEMGKG-SFKY 56
Query: 295 TAISMFFELEXKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 468
+ + E + + I + ++ K + I +ID+PGH DF + D A+
Sbjct: 57 AWVLDKLKAERERGITIDIALWKFETAK-YYITIIDAPGHRDFIKNMITGTSQADCAV 113
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 34.7 bits (76), Expect = 0.060
Identities = 35/118 (29%), Positives = 55/118 (46%)
Frame = +1
Query: 115 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS 294
M K++ N+ VI HVD GKST T L+ K G I R E +F + E + + K
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGI-DKRTIE-KF-EKEAQEMGKG-SFKY 56
Query: 295 TAISMFFELEXKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 468
+ + E + + I + ++ K + I +ID+PGH DF + D A+
Sbjct: 57 AWVLDKLKAERERGITIDIALWKFETAK-YYITIIDAPGHRDFIKNMITGTSQADCAV 113
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 34.3 bits (75), Expect = 0.079
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +1
Query: 139 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITI 288
N+ I H+DHGK+TLT ++ A+ + D K+E+ R ITI
Sbjct: 47 NVGTIGHIDHGKTTLTSAITRVQAKKGFAKHIKFDEIDKGKEEKKRGITI 96
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 34.3 bits (75), Expect = 0.079
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +1
Query: 139 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITI 288
N+ I H+DHGK+TLT ++ A+ + D K+E+ R ITI
Sbjct: 47 NVGTIGHIDHGKTTLTSAITRVQAKKGFAKHIKFDEIDKGKEEKKRGITI 96
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 33.9 bits (74), Expect = 0.10
Identities = 43/173 (24%), Positives = 74/173 (42%), Gaps = 2/173 (1%)
Frame = +1
Query: 64 INHLKW*ISRLDEIRGMMDKKRNIRN--MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGE 237
+ +K I++ E+ N+R+ + V+ HVD GK+ + D+ + + + G G
Sbjct: 459 MERIKLRIAKRKEVAQANRSTDNLRSPVICVLGHVDTGKTKMLDT-IRRTNVQQGEAGGI 517
Query: 238 TRFTDTRKDEQDRCITIKSTAISMFFELEXKDLVFITNPDQREKSEKGFLINLIDSPGHV 417
T +Q + + AI E + F+ Q + GFLI ID+PGH
Sbjct: 518 T--------QQIGATEVPAEAIK---ERCRQVRGFL----QDQMKIPGFLI--IDTPGHE 560
Query: 418 DFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDR 576
FS+ T + D A+ QT L+ I + ++ +NK+DR
Sbjct: 561 SFSNLRTRGSSLCDFAILVVDIMHGLEPQTIESLKLLIKGKTPFVIALNKIDR 613
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 32.7 bits (71), Expect = 0.24
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 115 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 210
M K++ N+ VI HVD GKST T L+ K G
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 32
>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 6 protein.
Length = 1254
Score = 32.3 bits (70), Expect = 0.32
Identities = 18/68 (26%), Positives = 29/68 (42%)
Frame = -1
Query: 536 SAIA*RSTVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRW 357
+AI ++ + T +T STT+ P +T + + +E T S+ P L RW
Sbjct: 691 TAIFAEASTGIITTDEETTSTTSTTPEITSTKEIVTESAITQTSVSVVESSTPRQLPERW 750
Query: 356 SGFVMNTK 333
V K
Sbjct: 751 KAIVNKFK 758
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 31.5 bits (68), Expect = 0.56
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +1
Query: 118 DKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 243
D +R ++++ HVDHGK+TL D++ + I AG G T+
Sbjct: 151 DLERRPPIVTIMGHVDHGKTTLLDAM-RNSQIAAGEFGGITQ 191
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/67 (22%), Positives = 30/67 (44%)
Frame = +1
Query: 376 KGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPIL 555
KG + +D+PGH F+S + D + QT ++ A ++ ++
Sbjct: 202 KGRRVTFLDTPGHAAFASMRARGAKGADIVVLVVAADDGVKEQTAQSIKFAKDANVQLVV 261
Query: 556 FMNKMDR 576
+NK+D+
Sbjct: 262 AVNKIDK 268
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 30.7 bits (66), Expect = 0.97
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -1
Query: 518 STVSVCTHTPDTQSTTTRAPSVTRS-AAVTSEEKSTCPGESIKLIKKP 378
+T + T T T +TTT P+ T + A TSE +T P + + KP
Sbjct: 222 TTPTTTTTTTTTPTTTTTTPTTTTTPATTTSETTTTTPTTTTQTTTKP 269
>U41992-4|AAL02506.2| 876|Caenorhabditis elegans Hypothetical
protein F32E10.3 protein.
Length = 876
Score = 30.7 bits (66), Expect = 0.97
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -1
Query: 518 STVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKK 381
+T + T + +TTT APS T + VT K P E KL+KK
Sbjct: 764 TTAAPSTKPAEETTTTTEAPSTT-TKPVTVAVKKVSPEEMEKLVKK 808
>AL009246-7|CAA15840.2| 347|Caenorhabditis elegans Hypothetical
protein C47F8.8 protein.
Length = 347
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 495 HTRHTVNNHKGSISDTECSCYFRREINV 412
H T H G IS T C+ +FRR I +
Sbjct: 15 HNTETTRRHFGIISCTACAAFFRRSIGM 42
>AF000264-4|AAC71125.3| 631|Caenorhabditis elegans Hypothetical
protein F43E2.3 protein.
Length = 631
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -1
Query: 488 DTQSTTTRAPSVTRSAAVTSEEKSTCPGESIK 393
D+ +T R+P TRS ++TS + C G+ I+
Sbjct: 174 DSANTILRSPYSTRSDSITSVDSGQCSGDQIE 205
>Z99171-6|CAB16309.2| 128|Caenorhabditis elegans Hypothetical
protein F47G4.6 protein.
Length = 128
Score = 29.5 bits (63), Expect = 2.2
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 4/115 (3%)
Frame = +1
Query: 7 FQSVRHCSAYGSWFNRTKIINHLKW*ISRLDEIRGMMDKKRNIRNMSVIAHVDHGKSTLT 186
FQ R + Y W++ I+ L S +I+ M KK+ IR+ S A + +L
Sbjct: 8 FQCYRIPNVYVQWYDLEPTIHWLTGGNSNSRQIQEMDQKKKKIRSTSAYALFFRERQSLE 67
Query: 187 DSLVSKA--GIIAG--ARAGETRFTDTRKDEQDRCITIKSTAISMFFELEXKDLV 339
A G I+ AR ++ + +K + RC + T+I+ E + + L+
Sbjct: 68 KRAAPYATFGQISQKIARQWDSLTEEEKKAYKQRCEKNRKTSIANAVEEKARQLL 122
>Z74472-5|CAA98943.1| 802|Caenorhabditis elegans Hypothetical
protein F23H12.5 protein.
Length = 802
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -1
Query: 518 STVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCP 408
ST + T T T +TTT AP+ T + T+E P
Sbjct: 210 STSTTTTTTTSTTTTTTEAPTTTTTIKTTTESIEPIP 246
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -2
Query: 166 DRRGRSQTCCGYSASCPSSHG 104
DRRGR TC G CP G
Sbjct: 61 DRRGRCMTCAGNLTDCPGHFG 81
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein (
C.elegans RNA polymeraseII largest subunit (ama-1 IV)
gene, complete cds. ).
Length = 1859
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -2
Query: 166 DRRGRSQTCCGYSASCPSSHG 104
DRRGR TC G CP G
Sbjct: 61 DRRGRCMTCAGNLTDCPGHFG 81
>Z69792-3|CAA93666.1| 284|Caenorhabditis elegans Hypothetical
protein F40E10.5 protein.
Length = 284
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Frame = -1
Query: 500 THTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESI---KLIKKPFSLF 366
T T T +TTT AP++ + + T+E+ +T +I + +K FS F
Sbjct: 218 TTTTTTTTTTTEAPTMPEAVSSTTEQSTTTTAAAIIAEETKEKEFSAF 265
>U41027-7|AAP46276.1| 1465|Caenorhabditis elegans Hypothetical protein
R08E3.1b protein.
Length = 1465
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = -1
Query: 518 STVSVCTHTPDTQSTTTRAPSVTRSAAVTS 429
STVSV T T ST+T APS ++S V++
Sbjct: 1044 STVSVITSTTMLPSTSTVAPSTSQSTIVST 1073
>U41027-6|AAC48194.5| 1512|Caenorhabditis elegans Hypothetical protein
R08E3.1a protein.
Length = 1512
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = -1
Query: 518 STVSVCTHTPDTQSTTTRAPSVTRSAAVTS 429
STVSV T T ST+T APS ++S V++
Sbjct: 1044 STVSVITSTTMLPSTSTVAPSTSQSTIVST 1073
>Z81143-5|CAB03518.2| 370|Caenorhabditis elegans Hypothetical
protein ZK265.7 protein.
Length = 370
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -1
Query: 521 RSTVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKST 414
++T + T T T +TTT P+ + A + +KST
Sbjct: 163 KTTTTTTTSTTSTSTTTTEKPTTATTTARVTPKKST 198
>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical
protein W01F3.3 protein.
Length = 2175
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -1
Query: 518 STVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKST 414
+T + + T + +TTT AP+ T S VT+ E +T
Sbjct: 235 TTTTTESPTTEASTTTTEAPTTTTSEEVTTTEITT 269
>Z73098-4|CAD44145.1| 565|Caenorhabditis elegans Hypothetical
protein T21C9.3b protein.
Length = 565
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -3
Query: 510 FSLYTHTRHTVNNHKGSISDTECS 439
F L +T+ TV+ KG+ SDTEC+
Sbjct: 371 FPLCDYTQCTVDVQKGNYSDTECA 394
>Z73098-3|CAD44144.1| 501|Caenorhabditis elegans Hypothetical
protein T21C9.3a protein.
Length = 501
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -3
Query: 510 FSLYTHTRHTVNNHKGSISDTECS 439
F L +T+ TV+ KG+ SDTEC+
Sbjct: 371 FPLCDYTQCTVDVQKGNYSDTECA 394
>U41104-4|AAK67239.1| 388|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 16 protein.
Length = 388
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -1
Query: 347 VMNTKSFXSSSKN-IEMAVDLMVMQRSCSSLRVSVKRVSPALAPAMIPALETNESVRVDL 171
V N K++ N ++ +++ M R+C ++ ++PA +P +T V +DL
Sbjct: 42 VSNRKTYSCQGNNDCDVTINIRCMCRACRYIKCIEVGMNPAGVQQRLPPSKTLVEVSMDL 101
Query: 170 P 168
P
Sbjct: 102 P 102
>AF083231-1|AAD03689.1| 388|Caenorhabditis elegans nuclear receptor
NHR-16 protein.
Length = 388
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -1
Query: 347 VMNTKSFXSSSKN-IEMAVDLMVMQRSCSSLRVSVKRVSPALAPAMIPALETNESVRVDL 171
V N K++ N ++ +++ M R+C ++ ++PA +P +T V +DL
Sbjct: 42 VSNRKTYSCQGNNDCDVTINIRCMCRACRYIKCIEVGMNPAGVQQRLPPSKTLVEVSMDL 101
Query: 170 P 168
P
Sbjct: 102 P 102
>AF040652-7|AAB95017.1| 210|Caenorhabditis elegans Hypothetical
protein T05A8.6 protein.
Length = 210
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -1
Query: 518 STVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKP 378
+T T T T TTT+AP T + A T+ + C S ++ P
Sbjct: 74 TTPGATTVTTTTAPTTTKAPDCTTTTAPTTTKAPDCTTCSQDILTDP 120
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 139 NMSVIAHVDHGKSTLTDSLVSKAGIIA-GARAGETRFTDTRKDEQD 273
N+ ++ HVD GK+TLT + A A A T R++ D
Sbjct: 15 NLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGIRRNTLD 60
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 139 NMSVIAHVDHGKSTLTDSLVSKAGIIA-GARAGETRFTDTRKDEQD 273
N+ ++ HVD GK+TLT + A A A T R++ D
Sbjct: 15 NLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGIRRNTLD 60
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,088,987
Number of Sequences: 27780
Number of extensions: 283119
Number of successful extensions: 1118
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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