Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_M09
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.09 |||mitochondrial type II fatty acid synthase componen...    74   2e-14
SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy...    27   3.2  
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom...    27   3.2  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    27   3.2  
SPAC8F11.07c |cdc24||DNA replication protein Cdc24|Schizosacchar...    27   3.2  
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...    27   3.2  
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch...    26   4.3  
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei...    25   7.5  
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    25   7.5  
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    25   7.5  
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc...    25   9.9  

>SPAC4H3.09 |||mitochondrial type II fatty acid synthase
           component|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 112

 Score = 73.7 bits (173), Expect = 2e-14
 Identities = 35/72 (48%), Positives = 49/72 (68%), Gaps = 1/72 (1%)
 Frame = +3

Query: 309 EIEERVLKVCKAYDKLS-ASQLTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEIPDGDAX 485
           + E+R+LKV  ++DK+    ++T  S F NDLGLDSLD VEV+MA+E+EF  +IPD DA 
Sbjct: 34  DAEKRILKVVSSFDKIQDPKKVTPTSTFANDLGLDSLDAVEVVMAIEEEFSIQIPDKDAD 93

Query: 486 RLVRPKDIVQYI 521
            +    D + YI
Sbjct: 94  EITSVGDAISYI 105


>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -2

Query: 602 VIVSKIQLVQNYEVYIFLLFINXFLVSNVLDNVFWSNQS 486
           ++ S + L  +Y   +FL+F+   +   V  NV+ S Q+
Sbjct: 308 ILQSALYLTSSYHFVLFLIFVEGLIGGTVYVNVYHSLQT 346


>SPBC18H10.09 |||zinc finger protein, zf-CHY
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 86  NGCCEYFPKCFRW 124
           NG CE++ K FRW
Sbjct: 326 NGACEHYKKSFRW 338


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = -3

Query: 637  CKLRKCNFVFNLLSFQKYNWSKIMKFIFFYYS*IXSLSAMYWTMSFGL 494
            CK  K N  F+      YNW+ + + I  + + +   S  YW   F L
Sbjct: 953  CKYVKSNITFSANDSANYNWNYVDQLICGFETYLPD-SVKYWRARFVL 999


>SPAC8F11.07c |cdc24||DNA replication protein
           Cdc24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 501

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = -2

Query: 521 NVLDNVFWSNQSLCIT--IRYLKSKFIFHCH 435
           N LDNVF S + L  +  + YL+ +F FHC+
Sbjct: 64  NKLDNVFSSLEWLTKSDAVIYLEDQFHFHCY 94


>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 2/111 (1%)
 Frame = +3

Query: 105 FRSAFGGLLRRSTTYRTSVTCRLSTVALQQKFSTIKAAVKIYKSQALQNGVPQSHRYSTG 284
           FR AF    R      TS    +   +L Q  +  +    I +  A  NG      + T 
Sbjct: 14  FREAFSLFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMINEVDADGNGTIDFTEFLTM 73

Query: 285 VQSKLSVQEIEERVLKVCKAYDKLSASQLTVD--SHFMNDLGLDSLDHVEV 431
           +  K+   + EE V +  K +DK     +TV+  +H +  LG + L   EV
Sbjct: 74  MARKMKDTDNEEEVREAFKVFDKDGNGYITVEELTHVLTSLG-ERLSQEEV 123


>SPAC7D4.11c |sec39||secretory pathway protein Sec39
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 769

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -3

Query: 634 KLRKCNFVFNLLSFQKYNW-SKIMKFI 557
           KL +  FV+ LL + K NW S +++F+
Sbjct: 31  KLPEAKFVYKLLDYTKGNWLSLLLRFL 57


>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
           Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 12/57 (21%), Positives = 31/57 (54%)
 Frame = +3

Query: 186 LQQKFSTIKAAVKIYKSQALQNGVPQSHRYSTGVQSKLSVQEIEERVLKVCKAYDKL 356
           L+++ + +K    +YKS+  ++ +     YS+  + K S++ ++ R+    K  +K+
Sbjct: 131 LEEEMAHLKKKCNVYKSKFEESSLRCKSLYSSNTKLKDSMETMKRRMETETKEMNKI 187


>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = +3

Query: 249 NGVPQSHRYSTGVQSKLSVQEIEERVLKVCKAYDKLSASQLTVDSHFMNDLGL-DSLDHV 425
           NG P     + G++    VQEIE+  +++ KA  +   SQLT+    +N     +SL   
Sbjct: 285 NGFPVLLSDTAGLRKGEDVQEIEKIGIEIAKA--RAEESQLTLFVFPINYHSFSESLKQS 342

Query: 426 EVIMAMED 449
           E++  ++D
Sbjct: 343 EILETIKD 350


>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 18  PRLADSMRENCLKENKAFRELEE 86
           P+ AD  R+N  K+NK  RE +E
Sbjct: 787 PKPADKFRDNYHKQNKRNREAKE 809


>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 581 LVQNYEVYIFLLFINXFLVSNVLDNVFWSN 492
           +V+NY +Y     I+   + N L   FW+N
Sbjct: 188 MVENYNLYGLAETIHGLRLGNNLTRTFWAN 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,645,037
Number of Sequences: 5004
Number of extensions: 50204
Number of successful extensions: 122
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)