Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_M09
         (669 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30915| Best HMM Match : cNMP_binding (HMM E-Value=6.3e-10)          33   0.28 
SB_5671| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.5  
SB_34084| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_32491| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_33085| Best HMM Match : Trypsin (HMM E-Value=0)                     28   6.0  
SB_16885| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  

>SB_30915| Best HMM Match : cNMP_binding (HMM E-Value=6.3e-10)
          Length = 673

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +3

Query: 351 KLSASQLTVDSHFMNDLGLDSLDHVE 428
           +++AS +T D H  ND+ LDS+DH +
Sbjct: 639 QIAASGMTRDEHAQNDVALDSIDHTQ 664


>SB_5671| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +3

Query: 504 DIVQYIADKEXIYE**KNINFIILDQLYF*NDNKLNT 614
           D+++Y  D E IYE  K+I  +++D  Y   DN+ +T
Sbjct: 14  DVIEYTTDPELIYEKWKDIVDVVIDGGY--GDNEAST 48


>SB_34084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 261

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
 Frame = +3

Query: 252 GVPQSHRYSTGVQSKLSVQEIEERVLKVCKAYDKLSASQLTVDSHFMNDLGLDSL--DHV 425
           GV +     TGV       +  ++V +   A DK++   + VD    ND+G+D +  D +
Sbjct: 92  GVDKVSEDDTGVDKVGEDDKSVDKVAEDDIAVDKVAEDDMDVDWVAANDMGVDKVAEDDM 151

Query: 426 EVIMAMEDEFGFE 464
            V    ED+ G +
Sbjct: 152 GVDKVAEDDMGVD 164


>SB_32491| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 199

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
 Frame = +3

Query: 108 RSAFGGLLRRSTTYRTSVTCRLSTVALQQKFSTIKAAVKIYKSQALQNGVPQSHRYST-- 281
           R+ F     +  T R+ +TC     A  Q+F+T   + +I + Q L  G   +   S   
Sbjct: 4   RTPFAMRKLKFATQRSHITCPSVITAFAQRFATFAISTRIAEIQMLATGACANQALSAME 63

Query: 282 GVQSKLSVQEIE 317
             ++K ++ E E
Sbjct: 64  SARAKANLDECE 75


>SB_33085| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 537

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -3

Query: 199 NFCCNATVERRHVTDVLYVVDLRNRP 122
           N+ C AT +R  VT ++ V+D++ +P
Sbjct: 243 NYTCTATNDRGSVTSIVGVIDMKFKP 268


>SB_16885| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 455

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
 Frame = +3

Query: 330 KVCKAYDKLSASQLTVDSHFMNDL---GLDSLDHV-EVIMAMEDEF 455
           K CK YDKL   +  ++++   D+    LD LD+  EV+  + DE+
Sbjct: 387 KNCKLYDKLRKREAFLENYKKEDIFKENLDELDNSREVVQQLIDEY 432


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,601,031
Number of Sequences: 59808
Number of extensions: 367204
Number of successful extensions: 1024
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)