Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_M09
(669 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132860-18|CAB60498.1| 133|Caenorhabditis elegans Hypothetical... 121 4e-28
AF039048-3|AAK68334.1| 246|Caenorhabditis elegans Hypothetical ... 97 1e-20
U00033-7|AAC48302.2| 145|Caenorhabditis elegans Hypothetical pr... 81 5e-16
U29488-4|AAL27235.1| 401|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical pr... 29 2.3
AF024496-1|AAB70339.1| 542|Caenorhabditis elegans Hypothetical ... 29 2.3
AL031635-10|CAA21037.2| 492|Caenorhabditis elegans Hypothetical... 28 6.9
AC025723-8|AAK29942.1| 1273|Caenorhabditis elegans C.elegans hom... 28 6.9
AC025723-7|AAN84833.1| 619|Caenorhabditis elegans C.elegans hom... 28 6.9
AC025723-6|AAN84834.1| 621|Caenorhabditis elegans C.elegans hom... 28 6.9
>AL132860-18|CAB60498.1| 133|Caenorhabditis elegans Hypothetical
protein Y56A3A.19 protein.
Length = 133
Score = 121 bits (292), Expect = 4e-28
Identities = 61/132 (46%), Positives = 83/132 (62%)
Frame = +3
Query: 150 RTSVTCRLSTVALQQKFSTIKAAVKIYKSQALQNGVPQSHRYSTGVQSKLSVQEIEERVL 329
R +V+ L TV+++ S ++ L P ++ L+ + +EER++
Sbjct: 3 RVAVSAALRTVSVRA-LSNASVQQRVITPILLSAQKPSFQIRQYSAKAPLTKKTLEERIV 61
Query: 330 KVCKAYDKLSASQLTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEIPDGDAXRLVRPKDI 509
V YDK+ A +LT+DS F DLGLDSLDHVEV+MAME+EFGFEIPDGDA R P+DI
Sbjct: 62 LVLSLYDKIDAKKLTMDSDFSKDLGLDSLDHVEVVMAMEEEFGFEIPDGDADRFKTPRDI 121
Query: 510 VQYIADKEXIYE 545
QYIADKE ++E
Sbjct: 122 FQYIADKEDVFE 133
>AF039048-3|AAK68334.1| 246|Caenorhabditis elegans Hypothetical
protein F16B4.6 protein.
Length = 246
Score = 96.7 bits (230), Expect = 1e-20
Identities = 47/85 (55%), Positives = 63/85 (74%)
Frame = +3
Query: 291 SKLSVQEIEERVLKVCKAYDKLSASQLTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEIP 470
+KL +E+ V+ A +S+++LT+DS F DLGLD LDHVEV+MA+E+EFGFEIP
Sbjct: 165 AKLLQKEVFRFVIVTSSA---ISSTKLTMDSDFSTDLGLDFLDHVEVVMAIEEEFGFEIP 221
Query: 471 DGDAXRLVRPKDIVQYIADKEXIYE 545
DGDA R P+DI+QYIADK ++E
Sbjct: 222 DGDADRFKTPRDILQYIADKVDVFE 246
>U00033-7|AAC48302.2| 145|Caenorhabditis elegans Hypothetical
protein F37C12.3 protein.
Length = 145
Score = 81.4 bits (192), Expect = 5e-16
Identities = 37/87 (42%), Positives = 59/87 (67%), Gaps = 3/87 (3%)
Frame = +3
Query: 294 KLSVQEIEERVLKVCKAYDKLSA---SQLTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFE 464
+L+ +++E+RVLK +++D+ A S L +D+ D G DSLD VE++MA+EDEFGFE
Sbjct: 59 QLTFKQVEDRVLKAVRSWDRFPADKESLLKLDADLSKDFGFDSLDQVEIVMALEDEFGFE 118
Query: 465 IPDGDAXRLVRPKDIVQYIADKEXIYE 545
IP D+ + +D +YI ++E +YE
Sbjct: 119 IPLQDSDKFKTIRDAFKYICEREDVYE 145
>U29488-4|AAL27235.1| 401|Caenorhabditis elegans Hypothetical
protein C56C10.7a protein.
Length = 401
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +3
Query: 387 FMNDLGLDSLDHVEVI-MAMEDEFGFEIPDGDAXRLVRPKDIVQYI 521
F+ + LD H V +A EDEFG D +L++PKDI Q++
Sbjct: 205 FLEKVELDPSQHYNVTSIAHEDEFG------DVGKLLKPKDIRQFL 244
>Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical protein
F32H2.5 protein.
Length = 2586
Score = 29.5 bits (63), Expect = 2.3
Identities = 20/56 (35%), Positives = 32/56 (57%)
Frame = +3
Query: 363 SQLTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEIPDGDAXRLVRPKDIVQYIADK 530
SQL D++ ++DLGLDSL VE+ A+E + + + L K +Q +AD+
Sbjct: 2206 SQLNADAN-LSDLGLDSLMGVEIKQALERDHDIVLSMKEIRTLTLNK--LQQLADQ 2258
>AF024496-1|AAB70339.1| 542|Caenorhabditis elegans Hypothetical
protein ZC178.1 protein.
Length = 542
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/50 (30%), Positives = 28/50 (56%)
Frame = +3
Query: 348 DKLSASQLTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEIPDGDAXRLVR 497
+KL + +L + + + LD VE++M++ED G + + D+ LVR
Sbjct: 152 EKLDSVELVMSVEDTIGVVREKLDSVELVMSVEDIIGVVLEELDSVELVR 201
>AL031635-10|CAA21037.2| 492|Caenorhabditis elegans Hypothetical
protein Y47D3B.4 protein.
Length = 492
Score = 27.9 bits (59), Expect = 6.9
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = +3
Query: 105 FRSAFGGLLRRSTTYRTSVTCRLS-TVALQQKFSTIKAAVKIYKSQALQNGVPQSHRYST 281
+ +F +T + +LS +VA Q FST +A YKS+ + H+
Sbjct: 404 YGKSFSSTATVATVFNHFALHKLSPSVAKSQYFSTSEALKLHYKSECPWESRNECHQLEY 463
Query: 282 GVQSKLSVQEIEERVLK 332
V S+ + EER+ K
Sbjct: 464 DVIEDTSLDKYEERLRK 480
>AC025723-8|AAK29942.1| 1273|Caenorhabditis elegans C.elegans
homeobox protein 44,isoform a protein.
Length = 1273
Score = 27.9 bits (59), Expect = 6.9
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
Frame = +3
Query: 105 FRSAFGGLLRRSTTYRTSV--TCRLSTVALQQKFSTIKAAVKIYKSQA--LQNGVPQSHR 272
F+S F GLL RST ++ C+ S V+L S +K A + +K+ A Q V +
Sbjct: 67 FQSEFDGLLARSTAAENALIDICK-SIVSLPDPKSLLKGA-EAWKNDAEKTQKAVEEREE 124
Query: 273 YSTG-VQSKLSVQEIEERVLKVCKAYDKLSASQLTVDSHFMN 395
++ ++++ + +KV K DKL+ + D N
Sbjct: 125 LKRQLIKVNNELEDLRGKDVKVRKLKDKLAKLESEQDIFIEN 166
>AC025723-7|AAN84833.1| 619|Caenorhabditis elegans C.elegans
homeobox protein 44,isoform b protein.
Length = 619
Score = 27.9 bits (59), Expect = 6.9
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
Frame = +3
Query: 105 FRSAFGGLLRRSTTYRTSV--TCRLSTVALQQKFSTIKAAVKIYKSQA--LQNGVPQSHR 272
F+S F GLL RST ++ C+ S V+L S +K A + +K+ A Q V +
Sbjct: 67 FQSEFDGLLARSTAAENALIDICK-SIVSLPDPKSLLKGA-EAWKNDAEKTQKAVEEREE 124
Query: 273 YSTG-VQSKLSVQEIEERVLKVCKAYDKLSASQLTVDSHFMN 395
++ ++++ + +KV K DKL+ + D N
Sbjct: 125 LKRQLIKVNNELEDLRGKDVKVRKLKDKLAKLESEQDIFIEN 166
>AC025723-6|AAN84834.1| 621|Caenorhabditis elegans C.elegans
homeobox protein 44,isoform c protein.
Length = 621
Score = 27.9 bits (59), Expect = 6.9
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
Frame = +3
Query: 105 FRSAFGGLLRRSTTYRTSV--TCRLSTVALQQKFSTIKAAVKIYKSQA--LQNGVPQSHR 272
F+S F GLL RST ++ C+ S V+L S +K A + +K+ A Q V +
Sbjct: 67 FQSEFDGLLARSTAAENALIDICK-SIVSLPDPKSLLKGA-EAWKNDAEKTQKAVEEREE 124
Query: 273 YSTG-VQSKLSVQEIEERVLKVCKAYDKLSASQLTVDSHFMN 395
++ ++++ + +KV K DKL+ + D N
Sbjct: 125 LKRQLIKVNNELEDLRGKDVKVRKLKDKLAKLESEQDIFIEN 166
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,839,526
Number of Sequences: 27780
Number of extensions: 289382
Number of successful extensions: 770
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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