Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_M06
(339 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC330.06c |||thioredoxin peroxidase|Schizosaccharomyces pombe|... 63 1e-11
SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces pombe... 43 1e-05
SPCC1827.06c |||aspartate semialdehyde dehydrogenase|Schizosacch... 25 3.2
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 25 4.2
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 25 4.2
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi... 24 5.5
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ... 24 5.5
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha... 24 5.5
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1... 24 7.3
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 24 7.3
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 24 7.3
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch... 23 9.6
>SPCC330.06c |||thioredoxin peroxidase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 156
Score = 63.3 bits (147), Expect = 1e-11
Identities = 32/80 (40%), Positives = 46/80 (57%)
Frame = +2
Query: 68 VGDQLPAADLFEDSPANKVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNAXKLKS 247
VG LP L+E+ P V E + K ++ VPGAFTP CS + +PGY+ N + +
Sbjct: 4 VGSTLPKVTLWENKPEEVV---EFPSQGKFIIVGVPGAFTPPCS-SQVPGYIANEKQFAA 59
Query: 248 DGVAEIXCVSVNDPYVMAAW 307
G++ I V+VND +V AW
Sbjct: 60 KGISGIYVVAVNDVFVTKAW 79
>SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 195
Score = 42.7 bits (96), Expect = 1e-05
Identities = 22/62 (35%), Positives = 36/62 (58%)
Frame = +2
Query: 62 LKVGDQLPAADLFEDSPANKVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNAXKL 241
++VGD +P L D + + ++TA K +V+FA P A TPGC+K G+ N K+
Sbjct: 46 IQVGDVIPDITL-PDEDGTSIRLRDITANKGLVIFAYPKASTPGCTKQGC-GFRDNYPKI 103
Query: 242 KS 247
++
Sbjct: 104 QA 105
>SPCC1827.06c |||aspartate semialdehyde
dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 357
Score = 25.0 bits (52), Expect = 3.2
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +2
Query: 167 AVPGAFTPGCSKTHLPGYVQNAXKLKSDGVAEIXCVSVNDPYVMAAWGA 313
+ P P + + GY + +++SD + +I VS+ V+ A GA
Sbjct: 295 STPDRPQPRLDRNNENGYAVSVGRIRSDSIFDIKFVSLVHNTVLGAAGA 343
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 24.6 bits (51), Expect = 4.2
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = +3
Query: 3 FTNRASARALH--ISQLKHGTNLRSGI 77
F A ++LH + QL H NLRSG+
Sbjct: 948 FYRNAQEKSLHAYLCQLLHSINLRSGL 974
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 24.6 bits (51), Expect = 4.2
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = -3
Query: 256 NSIRFQFXCVLYVSRQVCFRTSRG 185
NSI+ F C++Y+S+ + ++ G
Sbjct: 522 NSIKSPFLCLIYISKDMEYKLLHG 545
>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
Gut2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 649
Score = 24.2 bits (50), Expect = 5.5
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = -2
Query: 182 RRPAPQIIQPSFPPSTHKYSP 120
+RPAP P F P T +P
Sbjct: 31 KRPAPSHFNPQFTPFTKSLAP 51
>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 24.2 bits (50), Expect = 5.5
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Frame = -1
Query: 225 CTYPGKCVLEHPGVKAP----GTANNTTFF--PAVNSQIFTLLAGESSNKSAA 85
CT+ G VLE+ G + P G + FF AV ++ T G S++++ A
Sbjct: 314 CTFGGLFVLEYCGRRVPLIIGGVWQSICFFIYAAVGNRALTRKNGTSNHRAGA 366
>SPAC458.03 |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 868
Score = 24.2 bits (50), Expect = 5.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 197 SKTHLPGYVQNAXKLKSD 250
SKTH P YVQ+ K+ D
Sbjct: 502 SKTHSPVYVQDLCKMLKD 519
>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 23.8 bits (49), Expect = 7.3
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = -1
Query: 216 PGKCVLEHPGVKAPGTANNTTFFPAVN 136
P + HP + +P + + T PAVN
Sbjct: 553 PAPTAMPHPNITSPSPSISVTQRPAVN 579
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 23.8 bits (49), Expect = 7.3
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -1
Query: 186 VKAPGTANNTTFFPAVNSQIFTLLAGESSNKSAAGS*SPT 67
+ A G + NTT A+N ++ G S K A S PT
Sbjct: 102 LSATGESVNTTTVSAINEDTREVILGRPSPKLANQSTLPT 141
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 23.8 bits (49), Expect = 7.3
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = -2
Query: 158 QPSF-PPSTHKYSPY*RENLRINQQQAADPRP 66
QP+F PPS + Y P N I +D RP
Sbjct: 278 QPTFQPPSANVYQPASNANQVITPVSISDYRP 309
>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 23.4 bits (48), Expect = 9.6
Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Frame = -2
Query: 314 ELPKPPS--HTGH*QTRTXFQQL 252
EL PS H GH +TRT FQ L
Sbjct: 688 ELIHVPSIQHPGHWETRTVFQAL 710
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,328,440
Number of Sequences: 5004
Number of extensions: 24218
Number of successful extensions: 66
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -