Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_M06
(339 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0691 - 5167260-5167937 99 1e-21
06_03_0811 + 24830496-24831194 98 2e-21
01_06_0234 - 27739272-27739525,27739810-27739889,27740894-27741048 91 2e-19
01_01_1148 - 9113728-9113835,9113952-9114035,9114831-9114992,911... 74 3e-14
07_03_1427 + 26495072-26495148,26495323-26495468,26495581-264957... 40 4e-04
08_01_0627 + 5451140-5451839,5452635-5452662,5452730-5452786,545... 29 0.93
08_02_1430 - 27048055-27048408,27049674-27049841,27049927-270500... 28 2.1
06_01_0861 + 6527279-6527582,6527619-6527719,6527817-6528042,652... 27 2.8
06_01_0671 - 4899611-4899829,4900870-4901448 27 2.8
03_03_0001 + 13611070-13611172,13611812-13611873,13612001-136120... 27 2.8
03_02_0260 - 6924532-6924757,6925443-6925546,6925729-6926007,692... 27 5.0
03_05_0517 - 25118232-25118730,25119002-25119273 26 6.6
10_08_0072 - 14655379-14656608 26 8.7
09_04_0160 + 15226762-15227032,15227138-15227373,15227469-152275... 26 8.7
>02_01_0691 - 5167260-5167937
Length = 225
Score = 98.7 bits (235), Expect = 1e-21
Identities = 48/86 (55%), Positives = 60/86 (69%), Gaps = 4/86 (4%)
Frame = +2
Query: 62 LKVGDQLPAADLFEDSPAN----KVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQN 229
+ VGD+LP A L PA+ V + ELTAG+K VLFAVPGAFTP CS+ HLPG+++
Sbjct: 63 IAVGDKLPDATLSYFDPADGELKTVTVAELTAGRKAVLFAVPGAFTPTCSQKHLPGFIEK 122
Query: 230 AXKLKSDGVAEIXCVSVNDPYVMAAW 307
A +L + GV I CVSVND +VM AW
Sbjct: 123 AGELHAKGVDAIACVSVNDAFVMRAW 148
>06_03_0811 + 24830496-24831194
Length = 232
Score = 97.9 bits (233), Expect = 2e-21
Identities = 48/86 (55%), Positives = 63/86 (73%), Gaps = 4/86 (4%)
Frame = +2
Query: 62 LKVGDQLPAADL-FEDSPANK---VNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQN 229
+ VGD+LP A L + DSP + V + +LTAGKKVVLFAVPGAFTP C++ H+PG+V
Sbjct: 71 IAVGDKLPDATLSYFDSPDGELKTVTVRDLTAGKKVVLFAVPGAFTPTCTQKHVPGFVAK 130
Query: 230 AXKLKSDGVAEIXCVSVNDPYVMAAW 307
A +L++ GV + CVSVND +VM AW
Sbjct: 131 AGELRAKGVDAVACVSVNDAFVMRAW 156
>01_06_0234 - 27739272-27739525,27739810-27739889,27740894-27741048
Length = 162
Score = 91.5 bits (217), Expect = 2e-19
Identities = 45/83 (54%), Positives = 57/83 (68%), Gaps = 3/83 (3%)
Frame = +2
Query: 68 VGDQLPAADL--FE-DSPANKVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNAXK 238
VGD LP L F+ + +V++ L AGKKVVLF VPGAFTP CS H+PG++ A +
Sbjct: 6 VGDTLPDGQLGWFDGEDKLQQVSVHGLAAGKKVVLFGVPGAFTPTCSNQHVPGFINQAEQ 65
Query: 239 LKSDGVAEIXCVSVNDPYVMAAW 307
LK+ GV +I VSVNDP+VM AW
Sbjct: 66 LKAKGVDDILLVSVNDPFVMKAW 88
>01_01_1148 -
9113728-9113835,9113952-9114035,9114831-9114992,
9115120-9115224,9115584-9116216,9117412-9117496,
9118426-9118520,9119083-9119241,9119968-9119997,
9120100-9120306
Length = 555
Score = 74.1 bits (174), Expect = 3e-14
Identities = 30/54 (55%), Positives = 38/54 (70%)
Frame = +2
Query: 146 GKKVVLFAVPGAFTPGCSKTHLPGYVQNAXKLKSDGVAEIXCVSVNDPYVMAAW 307
GKKVV+F +PGA+T CS+ H+P Y N KLK+ GV + CVSVNDPY + W
Sbjct: 70 GKKVVIFGLPGAYTGVCSQAHVPSYKNNIDKLKAKGVDSVICVSVNDPYALNGW 123
>07_03_1427 +
26495072-26495148,26495323-26495468,26495581-26495729,
26495829-26496224
Length = 255
Score = 40.3 bits (90), Expect = 4e-04
Identities = 31/101 (30%), Positives = 47/101 (46%)
Frame = +2
Query: 5 HQSSVSASTSHFTT*AWHQLKVGDQLPAADLFEDSPANKVNICELTAGKKVVLFAVPGAF 184
H++S A+ S A L +GD +P +L DS K+ I + V+LF+ PG F
Sbjct: 23 HETSAKAAQSFV---AMPGLTIGDTVPNLEL--DSTHGKIRIHDFVGDTYVILFSHPGDF 77
Query: 185 TPGCSKTHLPGYVQNAXKLKSDGVAEIXCVSVNDPYVMAAW 307
TP C+ T L A + GV ++ +S +D W
Sbjct: 78 TPVCT-TELAAMAGYAKEFDKRGV-KLLGISCDDVQSHKDW 116
>08_01_0627 +
5451140-5451839,5452635-5452662,5452730-5452786,
5453205-5453874
Length = 484
Score = 29.1 bits (62), Expect = 0.93
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -2
Query: 179 RPAPQIIQPSFPPSTHKYSPY*RENLRINQQQAADPRP 66
+P PQ+ PSFP +T S R R + DP+P
Sbjct: 31 QPQPQLATPSFPTTTDTASRRRRRRRRRGRGNRHDPQP 68
>08_02_1430 -
27048055-27048408,27049674-27049841,27049927-27050042,
27050153-27050305,27050850-27050993,27051052-27051211,
27051332-27051970
Length = 577
Score = 27.9 bits (59), Expect = 2.1
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -1
Query: 210 KCVLEHPGVKAPGTANNTTFFPAVNSQIFTLLAGESSNKSAAG 82
K VLEHP +K TA N + AV +++ A K A G
Sbjct: 362 KQVLEHPWLKNADTAPNVSLGDAVRARLQQFSAMNKFKKKALG 404
>06_01_0861 +
6527279-6527582,6527619-6527719,6527817-6528042,
6528132-6528475,6528624-6528989,6529080-6529347,
6529479-6529696
Length = 608
Score = 27.5 bits (58), Expect = 2.8
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = +2
Query: 167 AVPGAFTPGCSKTHLPGYVQNAXKLKSDGVAEIXCVSVNDPYVMAAW-GAXHNT 325
A+ G P C H+ + K +S V + YV+A W G+ H++
Sbjct: 140 ALDGTHIPACVPMHMQDRFRGRKKFQSQNVLAAVDFDLRFLYVLAGWEGSAHDS 193
>06_01_0671 - 4899611-4899829,4900870-4901448
Length = 265
Score = 27.5 bits (58), Expect = 2.8
Identities = 22/76 (28%), Positives = 35/76 (46%)
Frame = +2
Query: 59 QLKVGDQLPAADLFEDSPANKVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNAXK 238
Q+ G P L D V++ + G+ VV++ P TPGC+K + + K
Sbjct: 117 QVSKGSAAPNFTL-RDQDGRAVSLSKFK-GRPVVVYFYPADETPGCTK-QACAFRDSYEK 173
Query: 239 LKSDGVAEIXCVSVND 286
K G AE+ +S +D
Sbjct: 174 FKKAG-AEVIGISGDD 188
>03_03_0001 +
13611070-13611172,13611812-13611873,13612001-13612072,
13612158-13612394,13612473-13612650,13612731-13612863,
13613686-13613845,13613925-13614078,13614159-13614262,
13614354-13614512,13615399-13615467,13615543-13615611,
13615772-13615909,13616044-13616124,13616805-13616933,
13617717-13617864,13618007-13618017,13618094-13618234,
13618314-13618439,13619164-13619220,13619355-13619453,
13619540-13619762,13620236-13620480,13621325-13621438
Length = 1003
Score = 27.5 bits (58), Expect = 2.8
Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Frame = +2
Query: 98 FEDSPANKVNIC--ELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNAXKLKSDGVAEIXC 271
FE P N E GK L G G SK+ P + L+ DG E+ C
Sbjct: 345 FESWPVNSAGSAGAEEGRGKVAALLKQQGVDIKGASKSSAPVDEEVPPLLEGDGKLEVYC 404
Query: 272 VS 277
V+
Sbjct: 405 VN 406
>03_02_0260 -
6924532-6924757,6925443-6925546,6925729-6926007,
6926093-6926368,6926460-6926678,6926758-6926926,
6927208-6927382,6927489-6927600,6929566-6929820
Length = 604
Score = 26.6 bits (56), Expect = 5.0
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = -1
Query: 270 HXISATPSDFSLXAFCTYPGKCVLEHPGVKAPGTAN 163
H + A PS + +C+++ PG K P AN
Sbjct: 261 HVVLANPSPILFYPISSTEVRCLVDVPGQKVPSIAN 296
>03_05_0517 - 25118232-25118730,25119002-25119273
Length = 256
Score = 26.2 bits (55), Expect = 6.6
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +2
Query: 212 PGYVQNAXKLKSDGVAEIXCVSVNDPYVMAAWGAXHN 322
PG ++ + +S G+ +I V+ + A+WG +N
Sbjct: 146 PGQLERGLRAESKGIKDIGVFHVSVEGIPASWGNLYN 182
>10_08_0072 - 14655379-14656608
Length = 409
Score = 25.8 bits (54), Expect = 8.7
Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = +2
Query: 11 SSVSASTSHF-TT*AWHQLKVGDQLPAADLFEDSPANKVNICELTAGKKVVLFAVPGAFT 187
SS SAST T +H LK+ D DLF S A K + G + + P T
Sbjct: 27 SSRSASTIVAGTASGYHLLKIDDYSRTRDLFPTSTALKSRAFTI-GGHRWRIQYYPNGNT 85
Query: 188 PGC 196
P C
Sbjct: 86 PNC 88
>09_04_0160 +
15226762-15227032,15227138-15227373,15227469-15227565,
15227657-15227783,15227870-15228482,15228572-15228835,
15228918-15229130,15229253-15229460,15229552-15229748,
15229830-15230183,15230287-15230874
Length = 1055
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -1
Query: 237 LXAFCTYPGKCVLEHPGVKAPGTANNTTFFPAVNSQIF 124
L A+CT P C+L + P + + FF A+ IF
Sbjct: 840 LLAYCTLPAVCLLTGKFIMPPISTFASLFFIALFISIF 877
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,430,257
Number of Sequences: 37544
Number of extensions: 187859
Number of successful extensions: 375
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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