Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_M06
(339 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43439| Best HMM Match : AhpC-TSA (HMM E-Value=9.80909e-44) 80 4e-16
SB_39102| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 1e-05
SB_20030| Best HMM Match : NTR (HMM E-Value=0.6) 29 0.96
SB_42557| Best HMM Match : GAD (HMM E-Value=1.4) 28 2.2
SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18) 27 2.9
SB_26565| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.9
SB_39291| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.0
SB_9346| Best HMM Match : AMMECR1 (HMM E-Value=2.6) 26 9.0
SB_56468| Best HMM Match : Bundlin (HMM E-Value=8.7) 26 9.0
SB_48764| Best HMM Match : RhoGAP (HMM E-Value=0) 26 9.0
SB_30765| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.0
>SB_43439| Best HMM Match : AhpC-TSA (HMM E-Value=9.80909e-44)
Length = 246
Score = 80.2 bits (189), Expect = 4e-16
Identities = 38/65 (58%), Positives = 46/65 (70%)
Frame = +2
Query: 119 KVNICELTAGKKVVLFAVPGAFTPGCSKTHLPGYVQNAXKLKSDGVAEIXCVSVNDPYVM 298
KV+ L AGK VVLFA+PGAFTP CS THLP Y + A K+ GV +I C+SVND +VM
Sbjct: 25 KVSTDTLFAGKTVVLFALPGAFTPTCSSTHLPRYNELAPVFKAQGVDDIICLSVNDTFVM 84
Query: 299 AAWGA 313
+W A
Sbjct: 85 NSWAA 89
>SB_39102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 137
Score = 45.2 bits (102), Expect = 1e-05
Identities = 17/35 (48%), Positives = 25/35 (71%)
Frame = +2
Query: 230 AXKLKSDGVAEIXCVSVNDPYVMAAWGAXHNTKGK 334
A +KS GV + C++VNDP+VM+AWG + +GK
Sbjct: 50 AMPIKSKGVDVVACIAVNDPFVMSAWGEANGCQGK 84
>SB_20030| Best HMM Match : NTR (HMM E-Value=0.6)
Length = 178
Score = 29.1 bits (62), Expect = 0.96
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -2
Query: 245 ISVYXRSVRIPASVF*NIPG*RRPAPQII 159
+SVY S +P +VF +PG R P P ++
Sbjct: 24 LSVYKASELLPRTVFIRVPGGRCPCPHLL 52
>SB_42557| Best HMM Match : GAD (HMM E-Value=1.4)
Length = 366
Score = 27.9 bits (59), Expect = 2.2
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +2
Query: 179 AFTPGCSKTHLPGYVQNAXKLKSDGVAE-IXCVSVN 283
A PG S+ L + + A +KSD +A+ I CV +N
Sbjct: 84 ASIPGFSQEQLQAWARRAKAVKSDSLADAIVCVQLN 119
>SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18)
Length = 268
Score = 27.5 bits (58), Expect = 2.9
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2
Query: 176 PAPQIIQPSFPPSTHKYSP 120
P+ + QPS PSTH YSP
Sbjct: 149 PSQSLYQPSPHPSTHLYSP 167
>SB_26565| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 418
Score = 27.1 bits (57), Expect = 3.9
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +2
Query: 164 FAVPGAFTPGCSKTHLPGYVQ-NAXKLKSDGVAEIXCVSV 280
+ VPGA GC THL G+++ A + K + + C V
Sbjct: 128 WVVPGA---GCMDTHLAGFLRTKALREKEEAAKNLGCTRV 164
>SB_39291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 361
Score = 25.8 bits (54), Expect = 9.0
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 104 DSPANKVNICELTAGKKVVLFAVPGAFTPGCSKT 205
+ PA ++N+C + VVL A P TP ++T
Sbjct: 272 NKPAKRINMCPPGIWECVVLQATPLLETPSATRT 305
>SB_9346| Best HMM Match : AMMECR1 (HMM E-Value=2.6)
Length = 490
Score = 25.8 bits (54), Expect = 9.0
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = +2
Query: 164 FAVPGAFTPGCSKTHLPGYVQNAXKLKSDGV-AEIXCVSVNDPYVMAAWGAXHNTK 328
F G+F+ GC + +P + + + +GV E C + P + A N K
Sbjct: 164 FKFSGSFSDGCQQRSVPASLISLVAMLLNGVNIENTCAQESQPCLTVAQAILFNAK 219
>SB_56468| Best HMM Match : Bundlin (HMM E-Value=8.7)
Length = 496
Score = 25.8 bits (54), Expect = 9.0
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = +2
Query: 164 FAVPGAFTPGCSKTHLPGYVQNAXKLKSDGV-AEIXCVSVNDPYVMAAWGAXHNTK 328
F G+F+ GC + +P + + + +GV E C + P + A N K
Sbjct: 101 FKFSGSFSDGCQQRSVPASLISLVAMLLNGVNIENTCAQESQPCLTVAQAILFNAK 156
>SB_48764| Best HMM Match : RhoGAP (HMM E-Value=0)
Length = 583
Score = 25.8 bits (54), Expect = 9.0
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -2
Query: 248 PISVYXRSVRIPASVF*NIPG*RRPAPQIIQPSFPPSTHKYSP 120
P+SVY PASV+ N P + P + + S P T Y P
Sbjct: 470 PLSVYDNR---PASVYDNEPTIKAPEAPLYRYSSPVFTTNYRP 509
>SB_30765| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 188
Score = 25.8 bits (54), Expect = 9.0
Identities = 11/49 (22%), Positives = 21/49 (42%)
Frame = -1
Query: 240 SLXAFCTYPGKCVLEHPGVKAPGTANNTTFFPAVNSQIFTLLAGESSNK 94
S+ ++ T P +C L P + P + N +I ++SN+
Sbjct: 22 SMTSYITVPSRCALLTPTRRRPSLGPIRCYLVTTNRRILRTACSKNSNR 70
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,568,418
Number of Sequences: 59808
Number of extensions: 198066
Number of successful extensions: 390
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 485763447
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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