Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_M06
         (339 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68341-4|CAA92767.2| 1266|Caenorhabditis elegans Hypothetical pr...    31   0.28 
U42848-2|AAA83608.2|  315|Caenorhabditis elegans Hypothetical pr...    28   1.5  
AF003740-5|AAL08031.1|  195|Caenorhabditis elegans Hypothetical ...    28   2.0  
U58748-10|AAB52970.2|  701|Caenorhabditis elegans Hypothetical p...    27   2.6  
AF016448-16|AAM45377.1|  394|Caenorhabditis elegans Atg (autopha...    27   3.4  
AF016448-15|AAB65961.1|  412|Caenorhabditis elegans Atg (autopha...    27   3.4  
Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical pr...    26   7.9  
U40946-2|AAO91682.1|  780|Caenorhabditis elegans Hypothetical pr...    26   7.9  
AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical ...    26   7.9  
AF016416-4|AAB65273.2|  150|Caenorhabditis elegans Hypothetical ...    26   7.9  

>Z68341-4|CAA92767.2| 1266|Caenorhabditis elegans Hypothetical
           protein F01G4.3 protein.
          Length = 1266

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -1

Query: 189 GVKAPGTANNTTFFPAVNSQIFTLLAGESSNKSAAGS*SPTLSW 58
           G    G+  N  F P    ++  LLAGE++ KS +G  S  LS+
Sbjct: 104 GNSIKGSPGNVPFLPGFLEELDDLLAGETTAKSTSGEESKFLSF 147


>U42848-2|AAA83608.2|  315|Caenorhabditis elegans Hypothetical
           protein C31H1.5 protein.
          Length = 315

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -1

Query: 249 SDFSLXAFCTYPGKCVLEHPGVKAPGTANNTTFFPAVN 136
           +DF   A C+   K   EH G + P     T F PA N
Sbjct: 113 ADFVTDAACSLVRKFGHEHYGTRTPDNRELTAFHPATN 150


>AF003740-5|AAL08031.1|  195|Caenorhabditis elegans Hypothetical
           protein C41D11.9 protein.
          Length = 195

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 294 TYGSLTDTHXISATPSDFSLXAFCTYPGKC 205
           T GS++ T  + +   D S    CT+PG C
Sbjct: 17  TIGSISGTKDVKSKNCDGSAGLTCTFPGDC 46


>U58748-10|AAB52970.2|  701|Caenorhabditis elegans Hypothetical
           protein ZK180.6 protein.
          Length = 701

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -2

Query: 194 IPG*RRPAPQIIQPSFPPS 138
           +P   RPAPQ +QPSF P+
Sbjct: 294 VPQPVRPAPQPVQPSFQPA 312


>AF016448-16|AAM45377.1|  394|Caenorhabditis elegans Atg (autophagy)
           related protein18, isoform b protein.
          Length = 394

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 104 DSPANKVNICELTAGKKVVLFAVPGAFTPG 193
           D+P NK+ + +LT+     L A PG+   G
Sbjct: 139 DTPTNKLGVLDLTSNPGNALIAYPGSTDTG 168


>AF016448-15|AAB65961.1|  412|Caenorhabditis elegans Atg (autophagy)
           related protein18, isoform a protein.
          Length = 412

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 104 DSPANKVNICELTAGKKVVLFAVPGAFTPG 193
           D+P NK+ + +LT+     L A PG+   G
Sbjct: 139 DTPTNKLGVLDLTSNPGNALIAYPGSTDTG 168


>Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical
           protein F40E10.4 protein.
          Length = 1410

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +2

Query: 92  DLFEDSPANKVNICELTAGKKVVLFAVPGAFTPGC 196
           DL  +SP     ICE T+ +K      PG +   C
Sbjct: 871 DLCLNSPCKNNAICETTSSRKYTCNCTPGFYGVHC 905


>U40946-2|AAO91682.1|  780|Caenorhabditis elegans Hypothetical
           protein W05H9.4 protein.
          Length = 780

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 182 RRPAPQIIQPSFPPSTHKYSPY 117
           R P  +  +PSFP    +YSPY
Sbjct: 193 RCPMRENKEPSFPKDAQRYSPY 214


>AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical
           protein F40E10.4 protein.
          Length = 1410

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +2

Query: 92  DLFEDSPANKVNICELTAGKKVVLFAVPGAFTPGC 196
           DL  +SP     ICE T+ +K      PG +   C
Sbjct: 871 DLCLNSPCKNNAICETTSSRKYTCNCTPGFYGVHC 905


>AF016416-4|AAB65273.2|  150|Caenorhabditis elegans Hypothetical
           protein F29A7.3 protein.
          Length = 150

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 71  GDQLPAADLFEDSPANKVNICELTAGKKVVLFA 169
           G+ L A  +F + P+ K+N+  L  GKK  +++
Sbjct: 94  GEGLTAFRVFTEQPSCKLNVALLLNGKKYQIYS 126


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,625,076
Number of Sequences: 27780
Number of extensions: 147166
Number of successful extensions: 338
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 338
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 429601520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)