Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_L23
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.11 |rpn6||19S proteasome regulatory subunit Rpn6|Schizo...    54   2e-08
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    27   1.8  
SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo...    27   2.4  
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    26   4.1  
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    25   7.2  

>SPAC23G3.11 |rpn6||19S proteasome regulatory subunit
           Rpn6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 22/52 (42%), Positives = 34/52 (65%)
 Frame = +1

Query: 415 LFDFFLDLEAGIGIXVXLCKECIXWAXEERRTFLRQSLEARLIALYFDTGMY 570
           L D F   +  + + + +  +CI WA +E+RTFLRQ+LE +LI+LY+D   Y
Sbjct: 90  LIDKFSGEKKSLPLQIEVANDCIKWAIKEKRTFLRQALETKLISLYYDNSSY 141



 Score = 29.5 bits (63), Expect = 0.44
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = +3

Query: 255 DEXNIRAKEQGILNXXXXXXXXXXXXXXXXXXXXTRPFLSLISKAKAAKLVRSLV 419
           DE     +EQ + N                    +RP ++  SKAK+AK+VR+L+
Sbjct: 37  DEKVANEQEQALTNLSDLYVRENRHNDLAQLVQQSRPLMANFSKAKSAKIVRTLI 91


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 271  LMFXXXXXXXSPVLTILSVMRTSSSLFVDDETRDL 167
            L+F        P LTI +++ T S    DDE R++
Sbjct: 1038 LVFGSIFGYLEPALTITAILSTKSPFLGDDEAREI 1072


>SPBC336.14c |ppk26||serine/threonine protein kinase
           Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 589

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 238 PVLTILSVMRTSSSLFVDDETRD 170
           P+ T+L   RT + LF+DD TR+
Sbjct: 172 PMPTLLPYERTVNGLFIDDTTRE 194


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 22  EKVVD*LCELQQNYKEKCSVVIQLL 96
           EK+V+ LC LQ   K+K + ++ LL
Sbjct: 598 EKLVEQLCSLQAQRKQKINEILNLL 622


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 33  RLTLRITTKLQRKVFRCNTTLAIYRIL 113
           R+ L I   L++++  CN++ AIY  L
Sbjct: 699 RVALTILKSLKQQILACNSSSAIYSFL 725


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,464,674
Number of Sequences: 5004
Number of extensions: 47087
Number of successful extensions: 114
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)