Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_L23
         (655 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0012 + 22145111-22146388                                         45   5e-05
03_05_0106 + 20880069-20881001                                         35   0.049

>04_04_0012 + 22145111-22146388
          Length = 425

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 19/39 (48%), Positives = 25/39 (64%)
 Frame = +1

Query: 454 IXVXLCKECIXWAXEERRTFLRQSLEARLIALYFDTGMY 570
           + + LCKE + W   E+RTFLRQ +EARL AL  +   Y
Sbjct: 108 LQISLCKEMVEWTRAEKRTFLRQRVEARLAALLLENQEY 146



 Score = 34.3 bits (75), Expect = 0.086
 Identities = 20/66 (30%), Positives = 26/66 (39%)
 Frame = +3

Query: 246 PEDDEXNIRAKEQGILNXXXXXXXXXXXXXXXXXXXXTRPFLSLISKAKAAKLVRSLV*L 425
           P      +R KE  I N                     RPF SLI KAK AK+VR ++  
Sbjct: 39  PSSSAEALRTKELAITNLTNYLTKENRAEELRNLLTQLRPFFSLIPKAKTAKIVRGIIDA 98

Query: 426 LPRFGG 443
           + +  G
Sbjct: 99  VAKIPG 104


>03_05_0106 + 20880069-20881001
          Length = 310

 Score = 35.1 bits (77), Expect = 0.049
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +1

Query: 481 IXWAXEERRTFLRQSLEARLIALYFDTGMY 570
           + W   E+RTFLRQ +EARL AL  +   Y
Sbjct: 2   VEWTRAEKRTFLRQRVEARLAALLLENQEY 31


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,834,941
Number of Sequences: 37544
Number of extensions: 314246
Number of successful extensions: 640
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)