Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_L23
         (655 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28566| Best HMM Match : PCI (HMM E-Value=1.8)                       52   3e-07
SB_1171| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.27 
SB_1307| Best HMM Match : Filament (HMM E-Value=0.13)                  31   0.82 
SB_8071| Best HMM Match : Metallothio_5 (HMM E-Value=3.4)              30   1.4  
SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19)                 29   3.3  
SB_46598| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_41513| Best HMM Match : RVT_1 (HMM E-Value=8.9e-21)                 29   4.4  
SB_14976| Best HMM Match : rve (HMM E-Value=1.3e-38)                   29   4.4  
SB_12590| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_27829| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_28566| Best HMM Match : PCI (HMM E-Value=1.8)
          Length = 344

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 32/85 (37%), Positives = 44/85 (51%)
 Frame = +3

Query: 165 ERSRVSSSTNRDEDVRMTDKMVSTGELPEDDEXNIRAKEQGILNXXXXXXXXXXXXXXXX 344
           ER+    S++ DE + +   +V     PED+E  I++KEQ IL                 
Sbjct: 6   ERALEIQSSSPDEAIGLLHAIVKRDVGPEDEE-GIKSKEQSILALASLLSRKGEAEELGG 64

Query: 345 XXXXTRPFLSLISKAKAAKLVRSLV 419
                RPFL ++SKAKAAKLVR+LV
Sbjct: 65  LIKFIRPFLQMVSKAKAAKLVRTLV 89


>SB_1171| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1415

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 22/59 (37%), Positives = 28/59 (47%)
 Frame = -3

Query: 383  TYEAQKWSGGFDKFCQLLSLPFLFVFLAEVKDTLLLCSYVXFIIFGQLASADHFVSHAD 207
            T    K S G + +C+L  LPF   FLA V  T++L + V F I     S     S AD
Sbjct: 1014 TIAVDKESYGGEHYCRLKDLPFFVAFLAPVV-TIVLVNTVIFTIIMYKLSTRPLPSSAD 1071


>SB_1307| Best HMM Match : Filament (HMM E-Value=0.13)
          Length = 916

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 17/40 (42%), Positives = 24/40 (60%)
 Frame = +3

Query: 171 SRVSSSTNRDEDVRMTDKMVSTGELPEDDEXNIRAKEQGI 290
           S V ++T+RD+DV   +   ST   P D+E +I AKE  I
Sbjct: 218 SLVYANTSRDDDVGEHETSRSTNTNPGDEELSILAKENEI 257


>SB_8071| Best HMM Match : Metallothio_5 (HMM E-Value=3.4)
          Length = 478

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 428 KKSNKGTYQFRSFSFTYEAQKWSGGFDKFC 339
           K ++    Q  SF+F+ +AQ+W GG D FC
Sbjct: 128 KAASINPQQTHSFTFSVKAQQWKGG-DNFC 156


>SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19)
          Length = 623

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +3

Query: 174 RVSSSTNRDEDVRMTDKMVSTGELPEDDEXNIRAKEQGI 290
           +   S   D+DV M DK+    E   DD  N  AK+  I
Sbjct: 65  KFEDSDESDDDVPMADKLTEDMEQNTDDNSNTVAKDSSI 103


>SB_46598| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1910

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = -2

Query: 216  SCGRLRLCSSMMRRVIFQITSLRPYCVYLYAYTXKV 109
            S  +L  C          +  L PYC Y YAYT K+
Sbjct: 1629 SATQLAACCDAAAVPALHLGGLFPYCAYTYAYTYKM 1664


>SB_41513| Best HMM Match : RVT_1 (HMM E-Value=8.9e-21)
          Length = 1080

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -2

Query: 276 LLLCFXHHLRAARQC*PFCQSCGRLRLC 193
           LL C  HH R   +  P C  CGR R+C
Sbjct: 433 LLRCAMHHGRTHVRDPPSCIKCGRPRVC 460


>SB_14976| Best HMM Match : rve (HMM E-Value=1.3e-38)
          Length = 1172

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -2

Query: 276 LLLCFXHHLRAARQC*PFCQSCGRLRLC 193
           LL C  HH R   +  P C  CGR R+C
Sbjct: 432 LLRCAMHHGRTHVRDPPSCIKCGRPRVC 459


>SB_12590| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 760

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = -2

Query: 216 SCGRLRLCSSMMRRVIFQITSLRPYCVYLYAYTXKV 109
           S  +L  C          +  L PYC Y Y YT K+
Sbjct: 383 SATQLAACCDAAAVPALHLGGLFPYCAYTYTYTYKI 418


>SB_27829| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 227

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = -3

Query: 446 PASKSRKKSNKGTYQFRSFSFTYEAQKWSGGFDKFCQLLSLPFLF-VFLAEVKDT 285
           P  +   KS +       F   +  Q+W    DK C  L  PF + VFL +V D+
Sbjct: 52  PMLRKVTKSGRKDAVVAFFKRHFRGQEWENWIDK-CSRLLFPFFYGVFLLKVDDS 105


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,745,405
Number of Sequences: 59808
Number of extensions: 362518
Number of successful extensions: 771
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)