Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_L23
         (655 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13876-16|AAW88394.1|  420|Caenorhabditis elegans Proteasome reg...    53   2e-07
U13876-15|AAA21173.2|  438|Caenorhabditis elegans Proteasome reg...    53   2e-07
Z11505-3|CAA77584.2|  468|Caenorhabditis elegans Hypothetical pr...    42   5e-04
Z82280-7|CAB05268.3|  304|Caenorhabditis elegans Hypothetical pr...    34   0.10 
Z12017-9|CAA78053.1|  537|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z11505-11|CAA77591.1|  537|Caenorhabditis elegans Hypothetical p...    30   1.6  
Z78065-5|CAB01515.1|  954|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AC024800-2|AAF60723.2|  320|Caenorhabditis elegans Serpentine re...    28   5.0  
AC024800-1|AAF60725.1|  320|Caenorhabditis elegans Serpentine re...    28   5.0  
U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated p...    27   8.8  
U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated p...    27   8.8  
M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related...    27   8.8  

>U13876-16|AAW88394.1|  420|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 6, isoform b
           protein.
          Length = 420

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 33/78 (42%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
 Frame = +1

Query: 340 QNLSKPPDHF*AS*VKLKLRNWYVPLFDFFLDLEAGIG-IXVXLCKECIXWAXEERRTFL 516
           +N+ +    F  S  K K       L D  L ++   G I V L KECI WA E+ RTFL
Sbjct: 63  RNMIEQTRPFLVSLGKAKAAKLVRDLVDLCLKIDDQDGDIKVGLVKECIQWATEQNRTFL 122

Query: 517 RQSLEARLIALYFDTGMY 570
           RQ+L ARL+ LY D   Y
Sbjct: 123 RQTLTARLVRLYNDLQRY 140


>U13876-15|AAA21173.2|  438|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 6, isoform a
           protein.
          Length = 438

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 33/78 (42%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
 Frame = +1

Query: 340 QNLSKPPDHF*AS*VKLKLRNWYVPLFDFFLDLEAGIG-IXVXLCKECIXWAXEERRTFL 516
           +N+ +    F  S  K K       L D  L ++   G I V L KECI WA E+ RTFL
Sbjct: 81  RNMIEQTRPFLVSLGKAKAAKLVRDLVDLCLKIDDQDGDIKVGLVKECIQWATEQNRTFL 140

Query: 517 RQSLEARLIALYFDTGMY 570
           RQ+L ARL+ LY D   Y
Sbjct: 141 RQTLTARLVRLYNDLQRY 158


>Z11505-3|CAA77584.2|  468|Caenorhabditis elegans Hypothetical
           protein F59B2.5 protein.
          Length = 468

 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 20/41 (48%), Positives = 25/41 (60%)
 Frame = +1

Query: 436 LEAGIGIXVXLCKECIXWAXEERRTFLRQSLEARLIALYFD 558
           L+ G    + L   CI WA   +R FLR+SL+ARLI LY D
Sbjct: 143 LDHGKKEKIDLLTNCIGWATSNKREFLRRSLQARLIRLYND 183


>Z82280-7|CAB05268.3|  304|Caenorhabditis elegans Hypothetical
           protein R05A10.7 protein.
          Length = 304

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 35/114 (30%), Positives = 49/114 (42%), Gaps = 4/114 (3%)
 Frame = -3

Query: 425 KSNKGTYQFRSFSFTYEAQKWSGGFDKF-CQLLSLPFLFVFLAEVKDTLLLCSYVXF--- 258
           KSN+ +  +  F +T + Q  S    KF C LL        L E K+   L + +     
Sbjct: 3   KSNRSSISY-DFCYT-DPQNTSIIGKKFDCSLLDTLENLNLLGETKEVFSLSNLIQNEND 60

Query: 257 IIFGQLASADHFVSHADVFVSVRR**DA*SFK*HRSGHTVYIYTLTLXKYSINS 96
           +IF    S DHF    D F S+R+         +   HT  +Y L L +Y INS
Sbjct: 61  LIFASATSDDHFNFSMDSFHSIRK---------YYPNHTYILYGLGLSEYYINS 105


>Z12017-9|CAA78053.1|  537|Caenorhabditis elegans Hypothetical
           protein R08D7.7 protein.
          Length = 537

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 382 VKLKLRNWYVPLFDFF-LDLEAGIGIXV 462
           + +K  NW+ PLFDF   DLE+ +G  V
Sbjct: 216 MNIKTENWHKPLFDFISSDLESKLGTLV 243


>Z11505-11|CAA77591.1|  537|Caenorhabditis elegans Hypothetical
           protein R08D7.7 protein.
          Length = 537

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 382 VKLKLRNWYVPLFDFF-LDLEAGIGIXV 462
           + +K  NW+ PLFDF   DLE+ +G  V
Sbjct: 216 MNIKTENWHKPLFDFISSDLESKLGTLV 243


>Z78065-5|CAB01515.1|  954|Caenorhabditis elegans Hypothetical
           protein T09E8.2 protein.
          Length = 954

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 18/47 (38%), Positives = 22/47 (46%)
 Frame = +1

Query: 148 PERCYLKDHASHHRRTETKTSA*LTKWSALASCPKMMXKT*EQRSRV 288
           P R YL   ASH  R   +  A L  W   A+CP +   T E+R  V
Sbjct: 766 PGRHYLC--ASHFNRNSLRYHAGLGLWRRAAACPVLACTTDEERQEV 810


>AC024800-2|AAF60723.2|  320|Caenorhabditis elegans Serpentine
           receptor, class h protein305 protein.
          Length = 320

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 579 SFRIHTSVEIQSNKSCFQRLPKKGASFFXGPXYAL 475
           SF IH S +++  K  F+++P     FF    Y L
Sbjct: 162 SFYIHNSDQVELRKFAFKKIPCPTIEFFDSKTYVL 196


>AC024800-1|AAF60725.1|  320|Caenorhabditis elegans Serpentine
           receptor, class h protein57 protein.
          Length = 320

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 579 SFRIHTSVEIQSNKSCFQRLPKKGASFFXGPXYAL 475
           SF IH S +++  K  F+++P     FF    Y L
Sbjct: 162 SFYIHNSDQVELRKFAFKKIPCPTIEFFDSKTYVL 196


>U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated
           protein 104, isoforma protein.
          Length = 1584

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = -3

Query: 440 SKSRKKSNKGTYQFRSFSFTYEAQKWSGGFDKFCQLLSLPFLFVFLAEVKDTL 282
           S  +KKSNKG   +R    T+  ++  GG  K   L +L    +   E   TL
Sbjct: 286 STKKKKSNKGVIPYRDSVLTWLLRENLGGNSKTAMLAALSPADINFDETLSTL 338


>U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated
           protein 104, isoformb protein.
          Length = 1628

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = -3

Query: 440 SKSRKKSNKGTYQFRSFSFTYEAQKWSGGFDKFCQLLSLPFLFVFLAEVKDTL 282
           S  +KKSNKG   +R    T+  ++  GG  K   L +L    +   E   TL
Sbjct: 286 STKKKKSNKGVIPYRDSVLTWLLRENLGGNSKTAMLAALSPADINFDETLSTL 338


>M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related
           protein protein.
          Length = 1584

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = -3

Query: 440 SKSRKKSNKGTYQFRSFSFTYEAQKWSGGFDKFCQLLSLPFLFVFLAEVKDTL 282
           S  +KKSNKG   +R    T+  ++  GG  K   L +L    +   E   TL
Sbjct: 286 STKKKKSNKGVIPYRDSVLTWLLRENLGGNSKTAMLAALSPADINFDETLSTL 338


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,830,362
Number of Sequences: 27780
Number of extensions: 275995
Number of successful extensions: 653
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)