Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_L19
         (372 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc...    78   4e-16
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|...    76   2e-15
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S...    74   8e-15
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar...    27   1.2  
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   5.0  
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M...    25   5.0  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    25   5.0  
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    24   8.8  

>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
           Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 78.2 bits (184), Expect = 4e-16
 Identities = 40/95 (42%), Positives = 56/95 (58%)
 Frame = +2

Query: 86  VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLIT 265
           +S +ELA  YSALIL D+ + +T +K+ ++ KAA V VEP W  +FAKALEG ++++L+ 
Sbjct: 1   MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLL 60

Query: 266 NIGSGVXXXXXXXXXXXXXXXXXXXXEEKKEEXKE 370
           NIGSG                      E+KEE KE
Sbjct: 61  NIGSGAGAAPVAGGAAAPAAADGEAPAEEKEEAKE 95


>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
           Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 109

 Score = 75.8 bits (178), Expect = 2e-15
 Identities = 39/95 (41%), Positives = 55/95 (57%)
 Frame = +2

Query: 86  VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLIT 265
           +S +ELA  Y+ALIL D+ + +T +K+ ++ KA  V VEP W  +FAKALEG ++++L+ 
Sbjct: 1   MSASELATSYAALILADEGIEITSDKLLSLTKAGNVEVEPIWATIFAKALEGKDLKELLL 60

Query: 266 NIGSGVXXXXXXXXXXXXXXXXXXXXEEKKEEXKE 370
           NIGS                      EEKKEE KE
Sbjct: 61  NIGSAGAASAPTAAGAGAAAPAEAAEEEKKEEAKE 95


>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
           Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 73.7 bits (173), Expect = 8e-15
 Identities = 40/96 (41%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
 Frame = +2

Query: 86  VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLIT 265
           +S +ELA  YSALIL D+ + +T +K+ ++ KAA V VEP W  +FAKALEG ++++L+ 
Sbjct: 1   MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLL 60

Query: 266 NIGS-GVXXXXXXXXXXXXXXXXXXXXEEKKEEXKE 370
           NIGS                       EE+KEE KE
Sbjct: 61  NIGSAAAAPAAGGAGAPAAAAGGEAAAEEQKEEAKE 96


>SPAC22F3.05c |alp41||ADP-ribosylation factor
           Alp41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 186

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
 Frame = +2

Query: 68  RSKLKMVSKAELACVYSALILVD-DDV--AVTGEKISTILKAAAVXVEPYWPGLFAKALE 238
           R+ L+ +   E     S L+L +  DV  A++ E+IS IL  +      +W      AL 
Sbjct: 103 RNTLQELLVEEKLLFTSILVLANKSDVSGALSSEEISKILNISKYK-SSHWRIFSVSALT 161

Query: 239 GINVRDLIT 265
           G+N++D I+
Sbjct: 162 GLNIKDAIS 170


>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 315

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 50  GLRQLARSKLKMVSKAELACVYSAL 124
           G+ QL    + ++SKA+L C Y  L
Sbjct: 159 GMLQLDMPHVNILSKADLLCTYGTL 183


>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 757

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 257 GHGH*CLPRLWRTDL 213
           G+G  CLP LWR D+
Sbjct: 402 GNGVQCLPLLWRQDI 416


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
           Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -1

Query: 126 MRAE*THANSAFDTIFS-FERASCRRP*LKREQARLSSDXQR 4
           +R +  H      TI +  ER SCRRP L  +  RL+   +R
Sbjct: 213 LRHQVMHCQPHLRTIVNAVERMSCRRPKLVPQATRLTEVLER 254


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
           complex subunit Tpr1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1039

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 221 TDLANMALHXQPPLSRWWKFSHQ 153
           T+L  + ++ Q P   W KF+H+
Sbjct: 38  TELCEILVNEQAPREFWTKFAHE 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,194,839
Number of Sequences: 5004
Number of extensions: 21551
Number of successful extensions: 56
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)