Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_L19
(372 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0113 + 897970-898038,898148-898271,898811-898896,898996-89... 83 7e-17
02_02_0220 - 7992124-7992351,7992458-7992562,7993499-7993711,799... 29 0.88
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 27 4.7
07_03_1291 + 25545749-25546262,25546989-25547669,25547693-255477... 27 6.2
07_01_0738 + 5626062-5626862 27 6.2
01_06_1007 - 33733500-33733604,33733837-33733917,33734191-337342... 27 6.2
07_03_0035 - 12677942-12678568 26 8.2
05_05_0093 + 22336593-22337198,22338123-22339076 26 8.2
>08_01_0113 +
897970-898038,898148-898271,898811-898896,898996-899049
Length = 110
Score = 83.0 bits (196), Expect = 7e-17
Identities = 45/98 (45%), Positives = 58/98 (59%), Gaps = 3/98 (3%)
Frame = +2
Query: 86 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLIT 265
+S +E+AC +ALIL DD + +T EKI+T++KAA + VE YWPGLFAK LE +V DLI
Sbjct: 1 MSSSEVACTLAALILHDDGIPITSEKIATLVKAANIKVEAYWPGLFAKLLEHRSVDDLIL 60
Query: 266 NIGSG---VXXXXXXXXXXXXXXXXXXXXEEKKEEXKE 370
++GSG EEKKEE KE
Sbjct: 61 SVGSGGGAAPVAAAAAPAAGGGAAAAPAAEEKKEEAKE 98
>02_02_0220 -
7992124-7992351,7992458-7992562,7993499-7993711,
7993937-7994196,7994425-7994701,7995226-7995371,
7995519-7995903,7996680-7996964
Length = 632
Score = 29.5 bits (63), Expect = 0.88
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +2
Query: 50 GLRQLARSKLKMVSKAELACVYSALILVDDDVAVTGEKIST 172
G+R+LA+ V+K + S +L+ +DVA+TG+ ++T
Sbjct: 249 GIRKLAQIFQSSVAKKKAVGKKSKALLLGEDVAITGDCVTT 289
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 27.1 bits (57), Expect = 4.7
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -2
Query: 158 HQLRQHHHPPG*EQSKH 108
HQ R+HHHPP + H
Sbjct: 562 HQRRRHHHPPAWDVEGH 578
>07_03_1291 +
25545749-25546262,25546989-25547669,25547693-25547751,
25549152-25549242,25549330-25549743,25550191-25550243,
25550947-25551177,25551492-25551708,25551790-25551890,
25552446-25552532,25553536-25553676,25553839-25553961,
25554070-25554522,25554931-25555308,25555410-25556060,
25556264-25556368,25556482-25556707,25557204-25557241
Length = 1520
Score = 26.6 bits (56), Expect = 6.2
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -3
Query: 232 GFGEQTWPIW--LYXYSRRFQDGGNFLTSYG 146
G G+ +W +Y +S + QDG NF+ G
Sbjct: 627 GAGKGLMTVWHAMYSHSSKIQDGSNFIDETG 657
>07_01_0738 + 5626062-5626862
Length = 266
Score = 26.6 bits (56), Expect = 6.2
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = -1
Query: 279 PEPMLVIRSRTLMPSKALANRPGQYGSTXTAAAFKMVEIFSPVTATSSST 130
P+ L R RT++ K L Q T + A + P ATS+ST
Sbjct: 102 PDSPLASRIRTILTHKKLKKSMPQPTITFSTAVYHHARSTVPAAATSTST 151
>01_06_1007 -
33733500-33733604,33733837-33733917,33734191-33734238,
33734364-33734549,33735148-33735678,33735823-33735864,
33735945-33736065,33736200-33736281,33737169-33737227,
33738492-33738564,33738694-33738913
Length = 515
Score = 26.6 bits (56), Expect = 6.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 216 VCSPKPWKASMSVT*SPTSALEWVLLRPLV 305
VC +P SP +L WVLLRP++
Sbjct: 482 VCKLRPTALLADGVASPLRSLAWVLLRPIM 511
>07_03_0035 - 12677942-12678568
Length = 208
Score = 26.2 bits (55), Expect = 8.2
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +3
Query: 210 GQVCSPKPWKASMSVT*SPTSALEWVLLRP 299
G V SP + A M SPT+A W LLRP
Sbjct: 96 GVVASPARFGAVMLA--SPTAANRWFLLRP 123
>05_05_0093 + 22336593-22337198,22338123-22339076
Length = 519
Score = 26.2 bits (55), Expect = 8.2
Identities = 27/90 (30%), Positives = 37/90 (41%), Gaps = 4/90 (4%)
Frame = -1
Query: 285 PTPEPMLVIRSRTLMPSKALANRPGQYGSTXTAAAFKMVEIFSPVTATSSSTRMR----A 118
P + V RTLM LA G+ + T + ++ E+ SP+ T TR R A
Sbjct: 302 PASGVLFVCTHRTLMDPVVLATVLGRRVAAVTYSISRLSEVLSPI-PTVRLTRDRGVDAA 360
Query: 117 E*THANSAFDTIFSFERASCRRP*LKREQA 28
+ S D E +CR P L R A
Sbjct: 361 QMRAELSRGDVAVCPEGTTCREPFLLRFSA 390
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,663,799
Number of Sequences: 37544
Number of extensions: 174883
Number of successful extensions: 402
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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