Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_L19
         (372 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M17886-1|AAA36471.1|  114|Homo sapiens protein ( Human acidic ri...    95   9e-20
BC007590-1|AAH07590.1|  114|Homo sapiens ribosomal protein, larg...    95   9e-20
BC003369-1|AAH03369.1|  114|Homo sapiens ribosomal protein, larg...    95   9e-20
AY303789-1|AAP68820.1|  113|Homo sapiens acidic ribosomal phosph...    95   9e-20
AB061836-1|BAB79474.1|  114|Homo sapiens ribosomal protein P1 pr...    95   9e-20
CR450339-1|CAG29335.1|  114|Homo sapiens RPLP1 protein.                94   1e-19
CR542209-1|CAG47005.1|  114|Homo sapiens RPLP1 protein.                88   1e-17
AK128281-1|BAC87365.1|  121|Homo sapiens protein ( Homo sapiens ...    29   3.6  
AK222952-1|BAD96672.1|  309|Homo sapiens translocase of outer mi...    28   8.4  

>M17886-1|AAA36471.1|  114|Homo sapiens protein ( Human acidic
           ribosomal phosphoprotein P1 mRNA, complete cds. ).
          Length = 114

 Score = 94.7 bits (225), Expect = 9e-20
 Identities = 47/98 (47%), Positives = 60/98 (61%), Gaps = 2/98 (2%)
 Frame = +2

Query: 83  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLI 262
           M S +ELAC+YSALIL DD+V VT +KI+ ++KAA V VEP+WPGLFAKAL  +N+  LI
Sbjct: 1   MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60

Query: 263 TNIGSG--VXXXXXXXXXXXXXXXXXXXXEEKKEEXKE 370
            N+G+G                       EEKK E K+
Sbjct: 61  CNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKK 98


>BC007590-1|AAH07590.1|  114|Homo sapiens ribosomal protein, large,
           P1 protein.
          Length = 114

 Score = 94.7 bits (225), Expect = 9e-20
 Identities = 47/98 (47%), Positives = 60/98 (61%), Gaps = 2/98 (2%)
 Frame = +2

Query: 83  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLI 262
           M S +ELAC+YSALIL DD+V VT +KI+ ++KAA V VEP+WPGLFAKAL  +N+  LI
Sbjct: 1   MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60

Query: 263 TNIGSG--VXXXXXXXXXXXXXXXXXXXXEEKKEEXKE 370
            N+G+G                       EEKK E K+
Sbjct: 61  CNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKK 98


>BC003369-1|AAH03369.1|  114|Homo sapiens ribosomal protein, large,
           P1 protein.
          Length = 114

 Score = 94.7 bits (225), Expect = 9e-20
 Identities = 47/98 (47%), Positives = 60/98 (61%), Gaps = 2/98 (2%)
 Frame = +2

Query: 83  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLI 262
           M S +ELAC+YSALIL DD+V VT +KI+ ++KAA V VEP+WPGLFAKAL  +N+  LI
Sbjct: 1   MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60

Query: 263 TNIGSG--VXXXXXXXXXXXXXXXXXXXXEEKKEEXKE 370
            N+G+G                       EEKK E K+
Sbjct: 61  CNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKK 98


>AY303789-1|AAP68820.1|  113|Homo sapiens acidic ribosomal
           phosphoprotein P1 protein.
          Length = 113

 Score = 94.7 bits (225), Expect = 9e-20
 Identities = 47/98 (47%), Positives = 60/98 (61%), Gaps = 2/98 (2%)
 Frame = +2

Query: 83  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLI 262
           M S +ELAC+YSALIL DD+V VT +KI+ ++KAA V VEP+WPGLFAKAL  +N+  LI
Sbjct: 1   MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60

Query: 263 TNIGSG--VXXXXXXXXXXXXXXXXXXXXEEKKEEXKE 370
            N+G+G                       EEKK E K+
Sbjct: 61  CNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKK 98


>AB061836-1|BAB79474.1|  114|Homo sapiens ribosomal protein P1
           protein.
          Length = 114

 Score = 94.7 bits (225), Expect = 9e-20
 Identities = 47/98 (47%), Positives = 60/98 (61%), Gaps = 2/98 (2%)
 Frame = +2

Query: 83  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLI 262
           M S +ELAC+YSALIL DD+V VT +KI+ ++KAA V VEP+WPGLFAKAL  +N+  LI
Sbjct: 1   MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60

Query: 263 TNIGSG--VXXXXXXXXXXXXXXXXXXXXEEKKEEXKE 370
            N+G+G                       EEKK E K+
Sbjct: 61  CNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKK 98


>CR450339-1|CAG29335.1|  114|Homo sapiens RPLP1 protein.
          Length = 114

 Score = 94.3 bits (224), Expect = 1e-19
 Identities = 46/98 (46%), Positives = 60/98 (61%), Gaps = 2/98 (2%)
 Frame = +2

Query: 83  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLI 262
           M S +ELAC+YSAL+L DD+V VT +KI+ ++KAA V VEP+WPGLFAKAL  +N+  LI
Sbjct: 1   MASVSELACIYSALVLHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60

Query: 263 TNIGSG--VXXXXXXXXXXXXXXXXXXXXEEKKEEXKE 370
            N+G+G                       EEKK E K+
Sbjct: 61  CNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKK 98


>CR542209-1|CAG47005.1|  114|Homo sapiens RPLP1 protein.
          Length = 114

 Score = 87.8 bits (208), Expect = 1e-17
 Identities = 45/98 (45%), Positives = 59/98 (60%), Gaps = 2/98 (2%)
 Frame = +2

Query: 83  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLI 262
           M S +ELA +YSALIL DD+V VT +KI+ ++KAA V VEP+WPGLFAKAL  +N+  LI
Sbjct: 1   MASVSELARIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI 60

Query: 263 TNIGSG--VXXXXXXXXXXXXXXXXXXXXEEKKEEXKE 370
            ++G+G                       EEKK E K+
Sbjct: 61  CDVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKK 98


>AK128281-1|BAC87365.1|  121|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46418 fis, clone THYMU3012907. ).
          Length = 121

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = -2

Query: 251 GH*CLPRLWRTDLANMA--LHXQPPLSRWWKFSHQLRQHHHPPG 126
           GH CLP   ++ LA  +  +H Q  L   W   HQ     HPPG
Sbjct: 5   GHCCLPGGAKSGLAGSSAPVHRQGRLRTVWAPQHQRVAPWHPPG 48


>AK222952-1|BAD96672.1|  309|Homo sapiens translocase of outer
           mitochondrial membrane 34 variant protein.
          Length = 309

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
 Frame = +2

Query: 8   CXSELKRACSLLS*GLRQLAR--SKLKMVSKAELACV-YSALILVDDDVAVTGEKISTIL 178
           C  +   A +L+   ++ L R  S  + + K  +A V Y  ++ +DD+V    E IS + 
Sbjct: 70  CIKDCTSALALVPFSIKPLLRRASAYEALEKYPMAYVDYKTVLQIDDNVTSAVEGISRMT 129

Query: 179 KAAAVXVEPYW 211
           +A    + P W
Sbjct: 130 RALMDSLGPEW 140


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,099,466
Number of Sequences: 237096
Number of extensions: 902440
Number of successful extensions: 1322
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1322
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2421480012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)