Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_L19
         (372 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal pro...   104   2e-23
U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal prote...   101   2e-22
U80836-5|AAB37892.2|  621|Caenorhabditis elegans Hypothetical pr...    28   1.9  
Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr...    27   3.2  
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr...    27   3.2  
Z81030-5|CAB02709.1|  324|Caenorhabditis elegans Hypothetical pr...    27   5.7  
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ...    27   5.7  
Z75955-6|CAB00120.1|  451|Caenorhabditis elegans Hypothetical pr...    26   7.5  
U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical pr...    26   7.5  

>AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal
           protein, acidic protein 1 protein.
          Length = 111

 Score =  104 bits (250), Expect = 2e-23
 Identities = 47/66 (71%), Positives = 58/66 (87%)
 Frame = +2

Query: 83  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLI 262
           M S  ELACVY+ALIL DD+VA+TGEKI+T+LKAA V  EPYWPGLFAKALEG++V++LI
Sbjct: 1   MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPYWPGLFAKALEGVDVKNLI 60

Query: 263 TNIGSG 280
           T++ SG
Sbjct: 61  TSVSSG 66


>U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal protein
           P1 homolog protein.
          Length = 111

 Score =  101 bits (241), Expect = 2e-22
 Identities = 46/66 (69%), Positives = 57/66 (86%)
 Frame = +2

Query: 83  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLI 262
           M S  ELACVY+ALIL DD+VA+TGEKI+T+LKAA V  EP WPGLFAKALEG++V++LI
Sbjct: 1   MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPNWPGLFAKALEGVDVKNLI 60

Query: 263 TNIGSG 280
           T++ SG
Sbjct: 61  TSVSSG 66


>U80836-5|AAB37892.2|  621|Caenorhabditis elegans Hypothetical
           protein B0432.7 protein.
          Length = 621

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +2

Query: 107 CVYSALILVDDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLITNIGS 277
           C ++ L + DDD  +T +  + +L+   V      PG+   A  G NV +    IGS
Sbjct: 269 CTFNVLTIGDDDCMMTRQIAADLLRRLVVSESSTTPGVPTLASTGKNVLNYGFFIGS 325


>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical protein
            T04F3.1 protein.
          Length = 3517

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -1

Query: 186  AAFKMVEIFSPVTATSSSTRMRAE*THANSAFDTIFS 76
            A   M EIFSPV++T+   R  +      S +DTI S
Sbjct: 2794 AGIPMDEIFSPVSSTADGNRRFSNFYEDRSGWDTIGS 2830


>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical protein
            T04F3.1 protein.
          Length = 3517

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -1

Query: 186  AAFKMVEIFSPVTATSSSTRMRAE*THANSAFDTIFS 76
            A   M EIFSPV++T+   R  +      S +DTI S
Sbjct: 2794 AGIPMDEIFSPVSSTADGNRRFSNFYEDRSGWDTIGS 2830


>Z81030-5|CAB02709.1|  324|Caenorhabditis elegans Hypothetical
           protein C01G10.7 protein.
          Length = 324

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +2

Query: 71  SKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVXVEPY 208
           S  KM+ K  +    S ++ ++D VA+T +  + +  AAA+   PY
Sbjct: 34  SNQKMLDKVPMMQADSVVLELEDGVALTAKADARVRAAAALDKLPY 79


>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
            protein F39C12.1 protein.
          Length = 5105

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 15/56 (26%), Positives = 22/56 (39%)
 Frame = +1

Query: 73   KTKNGVKS*ISMCLLCSHPGG**CCRNW*ENFHHLESGGCXCRAILARSVRQSLGR 240
            K  N   S  S+C +C+H G       W E   +    GC CR   ++  +    R
Sbjct: 5007 KDYNESFSQFSICNICNHGGHVNHIATWFETEKYCPVAGCDCRCQRSKQTKHLKAR 5062


>Z75955-6|CAB00120.1|  451|Caenorhabditis elegans Hypothetical
           protein R07B7.11 protein.
          Length = 451

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 8/32 (25%), Positives = 21/32 (65%)
 Frame = +2

Query: 86  VSKAELACVYSALILVDDDVAVTGEKISTILK 181
           +S+  + C++SA +++ +D+ + G+    +LK
Sbjct: 265 ISQFTVWCIWSAPLIMSNDLRIIGDSFKDVLK 296


>U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical
           protein C12D12.1b protein.
          Length = 648

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = -1

Query: 285 PTPEPMLVIRSRTLMPSKALANRPGQYGSTXTAAAFKMVEIFSPVTATSSST 130
           PTP P     +    P+ A     G  G++ TA A       +PV  TSS+T
Sbjct: 490 PTPVPTTT-NTPPANPTTATPTTVGTIGTSPTAPANLTTPTTAPVNPTSSTT 540


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,842,921
Number of Sequences: 27780
Number of extensions: 131421
Number of successful extensions: 317
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)