Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_L18
(581 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 29 0.65
SPAC977.02 |||S. pombe specific 5Tm protein family|Schizosacchar... 29 0.65
SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 29 0.65
SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 29 0.65
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy... 28 1.1
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 26 3.5
SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces pom... 26 4.6
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c... 25 6.1
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar... 25 6.1
SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces p... 25 8.1
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 25 8.1
>SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 146
Score = 28.7 bits (61), Expect = 0.65
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = -1
Query: 296 YVPRQFLELCFCTSLEVPVYRLALWYIF 213
++PR L + +C ++++ +Y L WYI+
Sbjct: 32 FIPRLSLTVKYCLAVKLLIYLLYCWYIY 59
>SPAC977.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 28.7 bits (61), Expect = 0.65
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = -1
Query: 296 YVPRQFLELCFCTSLEVPVYRLALWYIF 213
++PR L + +C ++++ +Y L WYI+
Sbjct: 32 FIPRLSLTVKYCLAVKLLIYLLYCWYIY 59
>SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 146
Score = 28.7 bits (61), Expect = 0.65
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = -1
Query: 296 YVPRQFLELCFCTSLEVPVYRLALWYIF 213
++PR L + +C ++++ +Y L WYI+
Sbjct: 32 FIPRLSLTVKYCLAVKLLIYLLYCWYIY 59
>SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 28.7 bits (61), Expect = 0.65
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = -1
Query: 296 YVPRQFLELCFCTSLEVPVYRLALWYIF 213
++PR L + +C ++++ +Y L WYI+
Sbjct: 32 FIPRLSLTVKYCLAVKLLIYLLYCWYIY 59
>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 27.9 bits (59), Expect = 1.1
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -2
Query: 232 LLFGIFSEENSLNPAKHFKIQSPKHSRYDRTAINAALSS 116
LLFG+ S+N + + KI S S +T IN+A S
Sbjct: 203 LLFGVKKFITSMNTSSNVKISSDPSSPSTQTTINSAAKS 241
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 26.2 bits (55), Expect = 3.5
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = +3
Query: 195 FKEFSSENIPKSKPINWDFEAGAKTQLKELS 287
F+ ++++ + +NWDF+ G+KT+ S
Sbjct: 99 FEADVNKDLSSATDMNWDFDMGSKTESNRAS 129
>SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 420
Score = 25.8 bits (54), Expect = 4.6
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = -2
Query: 235 GLLFGIFSEENSLNPAKHFKIQSPKHS 155
G+L IF+ +NSL P K KIQS + S
Sbjct: 214 GILNTIFNSQNSLTPQK--KIQSSERS 238
>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 519
Score = 25.4 bits (53), Expect = 6.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 81 PLNAPHFINTGSDESAALIAVLS*RLCFGLWI 176
P+ AP +N S+ LI V + CFG+W+
Sbjct: 296 PILAPSMMN--SEMGCVLICVAAGWACFGIWM 325
>SPAPB1A10.07c |||sphingolipid biosynthesis
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 25.4 bits (53), Expect = 6.1
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +3
Query: 99 FINTGSDESAALIAVLS*RLCFGLWILKCLA 191
F+ G +A + +++ +C GL++ CLA
Sbjct: 401 FVRIGFSYAAVWVKIITSWVCHGLYVWSCLA 431
>SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 340
Score = 25.0 bits (52), Expect = 8.1
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -1
Query: 293 VPRQFLELCFCTSLEVPVYRLALWYIFGRKLLEPGQTLQN 174
VPR F+E+C T+ VP + Y +++L G L N
Sbjct: 177 VPRTFMEICTLTN--VPKKEIGRVYKTLQRMLTEGGALHN 214
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 25.0 bits (52), Expect = 8.1
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -2
Query: 193 PAKHFKIQSPKHSRYDRTA 137
P+K+F + SP H +Y T+
Sbjct: 588 PSKNFTVSSPDHLKYGNTS 606
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,066,189
Number of Sequences: 5004
Number of extensions: 39521
Number of successful extensions: 124
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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