Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_L18
         (581 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58926| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_58602| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  

>SB_58926| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2371

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/70 (22%), Positives = 29/70 (41%)
 Frame = +2

Query: 137 CSPIIATMFRALDFEVFGRVQGVFFRKYTKEQADKLGLRGWCKNTAQGTVLGHMQGTLXK 316
           C P +   F  LD  V   + G+  +    + A    ++  C N+++   L   QG +  
Sbjct: 682 CVPDLTNQFIQLDLGVMTTISGIATQGGDNKWATFYHVKLKCDNSSRSITLSGFQGNMDA 741

Query: 317 IEVMMHWLKT 346
             V+  WL +
Sbjct: 742 NTVVTRWLSS 751


>SB_58602| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 628

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -3

Query: 546 YGIGSTAVMGRAYHIKLREY 487
           YG+G  ++ G A HIK+R+Y
Sbjct: 554 YGLGLNSMRGEAKHIKIRQY 573


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,951,621
Number of Sequences: 59808
Number of extensions: 284716
Number of successful extensions: 630
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)