Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_L16
(652 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31176| Best HMM Match : No HMM Matches (HMM E-Value=.) 102 3e-22
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.47
SB_32425| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_729| Best HMM Match : Alpha_L_fucos (HMM E-Value=1.1e-11) 30 1.4
SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48) 30 1.4
SB_18821| Best HMM Match : SH3_1 (HMM E-Value=5.7e-16) 30 1.4
SB_33432| Best HMM Match : 7tm_1 (HMM E-Value=1e-15) 30 1.9
SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1) 29 2.5
SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_34220| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_44670| Best HMM Match : 7tm_1 (HMM E-Value=3e-32) 28 7.6
SB_5525| Best HMM Match : zf-C3HC4 (HMM E-Value=6.2e-12) 28 7.6
>SB_31176| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 102 bits (244), Expect = 3e-22
Identities = 49/120 (40%), Positives = 69/120 (57%)
Frame = +1
Query: 289 ILTLMFAFSAILYVIYKSYISPVFYKKELTEVGFDHIPQGPDKGRRISRAQASRRMGSKL 468
+ + F + I+ + K SP+ + L E G+ IP R ++ +
Sbjct: 58 LAAVCFIATRIVVKLCKLLFSPIILTRRLEEAGY--IPDERHTLRDVAEHTRRLKNAGDF 115
Query: 469 PPPYPNGWFAVAETRELKVGSVLSIDALGQNLCVYRGEDGLARCVDAYCPHLGANLAVGG 648
PP +PNGWF V +++LKVG+V + LG+NL V+RGEDG+ VDAYCPHLGANL VGG
Sbjct: 116 PPVFPNGWFEVMGSQDLKVGNVKHVSCLGENLAVFRGEDGVVCIVDAYCPHLGANLGVGG 175
>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 31.9 bits (69), Expect = 0.47
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = +2
Query: 422 GGSVAPKPPDGWAANCPLPTPMGGSRSPKQ 511
GGSV P PP N PLP P G +P Q
Sbjct: 916 GGSVPPPPPPP-GGNAPLPPPPPGGSAPSQ 944
>SB_32425| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 770
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +1
Query: 334 YKSYISPVFYKKELTEVGFDHIPQGPDKGRRISRAQASRRMGSKLPPPYP 483
YKSY ++ G D +PQ P + S+ + R +K PPP P
Sbjct: 27 YKSYSGIEYHLLNFKHDGTD-VPQPPPSSSKKSKGRGRRSAKNKKPPPSP 75
>SB_729| Best HMM Match : Alpha_L_fucos (HMM E-Value=1.1e-11)
Length = 155
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -1
Query: 214 KCLLFLLSVRCRGTPCSKRRLP*WRMENVDDPP 116
+CLLF+++V TPC + LP W E++D P
Sbjct: 4 RCLLFVIAVVGTVTPCISKYLPTW--ESLDSRP 34
>SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)
Length = 341
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/32 (50%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +2
Query: 413 TRGGGSVAPKPP-DGWAANCPLPTPMGGSRSP 505
T GG V P PP DG A P P P GG+ P
Sbjct: 285 TGGGAPVPPPPPADGSAPAPPPPPPPGGAPPP 316
>SB_18821| Best HMM Match : SH3_1 (HMM E-Value=5.7e-16)
Length = 299
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/29 (51%), Positives = 21/29 (72%)
Frame = +3
Query: 378 RSRLRSYTSRSGQGEADQSRPSLQTDGQQ 464
R+RLR+ T+ SGQ ++S SL+TD QQ
Sbjct: 67 RARLRTLTTESGQSSENES--SLETDNQQ 93
>SB_33432| Best HMM Match : 7tm_1 (HMM E-Value=1e-15)
Length = 278
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Frame = +1
Query: 193 KAETTNIFLLLQKNITIESSKHVFSSIVEYIL----ILTLMFAFSAILYVIYKSYISPVF 360
+ +T N+FLL+ + + ++ +I EYI ++ F++++ V + S I+P
Sbjct: 191 EGKTINVFLLVVSIFILSWAPIIYMTITEYIASRPDLIPHQLPFASLIIVAFASMINPFL 250
Query: 361 Y 363
Y
Sbjct: 251 Y 251
>SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)
Length = 768
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Frame = +2
Query: 419 GGGSVAPKPPDGWAANCPLPTPMGGSRS---PKQGSLKLAASSLSMPWVRI 562
GG + P PP G A P P GG + P++G +K + W RI
Sbjct: 685 GGAAPPPPPPIGGGAPPPPPPGFGGFANLVKPRKGVIKPGVEMRPLFWQRI 735
>SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2211
Score = 28.7 bits (61), Expect = 4.3
Identities = 27/93 (29%), Positives = 41/93 (44%)
Frame = +2
Query: 332 YTSHISVLFSIKRN*QKSASIIYLKVRTRGGGSVAPKPPDGWAANCPLPTPMGGSRSPKQ 511
+ +H SVL ++N ++S I +K T+G S A + W A G + P +
Sbjct: 637 FENHPSVLRIKQKNLKEST--ICIKPVTQGQVSGALGALNIWKAT-------GSDQIPSK 687
Query: 512 GSLKLAASSLSMPWVRICACTAVRTAWPGAWTR 610
LK+ A L+ P + AWP AW R
Sbjct: 688 -LLKIGAEELARPLATLYNSCITAGAWPSAWKR 719
>SB_34220| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 452
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 647 PPTARFAPKCGQYASTHRARPS 582
P TA PKCG + H+A+PS
Sbjct: 212 PATAHKCPKCGLNLNKHQAKPS 233
>SB_44670| Best HMM Match : 7tm_1 (HMM E-Value=3e-32)
Length = 279
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Frame = +1
Query: 250 SKHVFSSIVEYILILTLM-FAFSAIL--YVIYKSYISPVFY 363
+ H F ++++ + TLM AFS IL Y +KS I+P+ Y
Sbjct: 57 TNHTFEMFLDFLALQTLMASAFSLILVTYDRFKSIIAPMRY 97
>SB_5525| Best HMM Match : zf-C3HC4 (HMM E-Value=6.2e-12)
Length = 389
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 413 TRGGGSVAPKPPDGWAANCPLPTPMGGSRSPKQGSL 520
++ G S PP + + P P+G SPKQGS+
Sbjct: 41 SQAGSSSVTSPPYRSSESSPYRGPVGRVASPKQGSM 76
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,938,692
Number of Sequences: 59808
Number of extensions: 504510
Number of successful extensions: 3183
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3169
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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